README.md

In PeteHaitch/SparseSummarizedExperiment: SparseSummarizedExperiment Container

R package: SparseSummarizedExperiment

This is an experimental package that defines S4 classes and methods for sparse genomic data. The API (and, indeed, much of the infrastructure) is based on the SummarizedExperiment Bioconductor package.

Fair warning, while the package is now reasonably stable with most functionality documented and ever-improving test coverage, the final API is not locked in.

Installation

SparseSummarizedExperiment is in development and can only be installed using the development version of Bioconductor. Please first read these instructions on installing the development version of Bioconductor.

devtools::install_github("PeteHaitch/SparseSummarizedExperiment")

License

The MIT License (MIT)

Copyright (c) 2015-2016 Peter Hickey

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

PeteHaitch/SparseSummarizedExperiment documentation built on May 8, 2019, 1:31 a.m.