README.md

In PhDMeiwp/circos.JCR: Circular visualization of Journal Citing/Cited Relationships

circos.JCR

Authors

Weiping MEI https://PhDMeiwp.github.io

Graduate School of Fisheries and Environmental Sciences, Nagasaki University

Installation

Get the development version from github:

install.packages("devtools")
devtools::install_github("PhDMeiwp/circos.JCR@master", force = TRUE)

Usage

circos.JCR(x.cite, JCR.name, x.allcite,
       col = NULL, transparency = 0.8,
       order.by = 0, text.size = 0.7,
       self.include = FALSE, start.degree = 90,
       draw.line = FALSE,
       ...)

Examples

library(circlize)
library(circos.JCR)

NatureCiting = c(4665, 2719, 1757, 1279, 713, 630, 556, 445, 441, 413,
                402,  387,  367,  359,  351)
JCR.name =c("Nature", "SCIENCE", "P NATL ACAD SCI USA", "CELL", "PHYS REV LETT",
            "ASTROPHYS J", "J BIOL CHEM", "NAT COMMUN", "NUCLEIC ACIDS RES", "PLOS ONE",
            "NEURON", "J AM CHEM SOC", "J NEUROSCI", "BIOINFORMATICS", "MON NOT R ASTRON.")
Allciting = c(7156,  6564,  12214, 2818, 968,
            19399, 7772, 10489, 6570, 27664,
            2251,  3487, 6329,  1475, 28571)

circos.JCR(x.cite = NatureCiting, JCR.name = JCR.name, x.allcite = Allciting, start.degree = 90, order.by = 0, text.size = 0.7)
circos.JCR(x.cite = NatureCiting, JCR.name = JCR.name, x.allcite = Allciting, start.degree = 90, order.by = 1, text.size = 0.7)

Contributors

http://jokergoo.github.io/circlize/

PhDMeiwp/circos.JCR documentation built on May 30, 2019, 11:41 a.m.