dsb_map_chimp_full: Data of the DsbMap for chimpanzees

In PhHermann/STRAH: Short Tandem Repeats Analysis of Hotspot Zones

Description

A dataset containing all translated PRDM9-A type hotspots of Pratto et al. (2014) for chimpanzees. The translation was performed using liftOver of the UCSC Genome Browser from the human genome (hg19) to the chimpanzees genome (panTro5).

Usage

data (dsb_map_chimp_full)

Format

The data set contains 64078 rows and 3 columns. We provide information on the columns (column nr, column name) hereafter:

1, chrom

The chromosome under study

2, start

Start coordinates of the hotspot

3, end

End coordinates of the hotspot

References

Heissl, A., et al. (2018) Length asymmetry and heterozygosity strongly influences the evolution of poly-A microsatellites at meiotic recombination hotspots. doi: https://doi.org/10.1101/431841

Pratto, F., et al. (2014). Recombination initiation maps of individual human genomes. Science, 346(6211).

Kuhn RM, et al. (2013) The UCSC genome browser and associated tools, Brief. Bioinform., 14, 144-161.

See Also

STR_analysis, STR_detection

PhHermann/STRAH documentation built on June 7, 2020, 6:15 p.m.