calculate.default: Calculate GSVA scores.

In PiotrTymoszuk/gseaTools: Tools for Import and Transformation of Gene Set Enrichment Analysis Signatures

Calculate GSVA scores.

Description

Calculates multi-gene scores via gsva function, given a character vector with gene names and a data frame with expression values.

Usage

## Default S3 method:
calculate(x, data, ...)

## S3 method for class 'dbsig'
calculate(x, data, ...)

Arguments

x	a list with gene name/identifier vectors or a dbsig object.
data	a data frame with the expression values.
...	extra arguments passed to gsva.

Details

See: gsva.

Value

A data frame with GSVA enrichment scores: rows are samples, columns are scores.

PiotrTymoszuk/gseaTools documentation built on Nov. 6, 2022, 10:23 p.m.