Files in PoonLab/twt
treeswithintrees
.gitignore
CONTRIBUTING.Rmd
DESCRIPTION
LICENSE
NAMESPACE
R/EventLogger.R
R/Model.R
R/Run.R
R/classes.R
R/simInnerTree.R
R/simOuterTree.R
R/ztnbinom.R
README.Rmd
README.md
cvg.R
inst/extdata/SI.yaml
inst/extdata/chain.yaml
inst/extdata/structSI.yaml
man/Compartment.Rd
man/CompartmentType.Rd
man/EventLogger.Rd
man/Lineage.Rd
man/Model.Rd
man/Run.Rd
man/as.phylo.EventLogger.Rd
man/as.phylo.Run.Rd
man/attach.tree.Rd
man/dot-assign.events.Rd
man/dot-get.rate.matrices.Rd
man/dot-plot.dynamics.Rd
man/dot-plot.outer.tree.Rd
man/dot-reorder.events.Rd
man/dot-reorder.inner.events.Rd
man/dot-resolve.bottleneck.Rd
man/dot-resolve.coalescent.Rd
man/dot-resolve.migration.Rd
man/dot-resolve.transition.Rd
man/dot-resolve.transmission.Rd
man/dot-rexp.coal.Rd
man/dot-sample.outer.events.Rd
man/dot-scale.contact.rates.Rd
man/figures/README-unnamed-chunk-2-1.png
man/figures/README-unnamed-chunk-2-2.png
man/figures/README-unnamed-chunk-2-3.png
man/figures/README-unnamed-chunk-3-1.png
man/figures/README-unnamed-chunk-3-2.png
man/figures/README-unnamed-chunk-3-3.png
man/load.outer.tree.Rd
man/plot.EventLogger.Rd
man/plot.Run.Rd
man/print.EventLogger.Rd
man/print.Model.Rd
man/sample.coalescents.Rd
man/sim.inner.tree.Rd
man/sim.outer.tree.Rd
man/summary.Model.Rd
tests/testthat.R
tests/testthat/example1.yaml
tests/testthat/example2.yaml
tests/testthat/example3.yaml
tests/testthat/example4.yaml
tests/testthat/test.yaml
tests/testthat/test_EventLogger.R
tests/testthat/test_Model.R
tests/testthat/test_Run.R
tests/testthat/test_classes.R
tests/testthat/test_simInnerTree.R
tests/testthat/test_simOuterTree.R
vignettes/intro.Rmd
vignettes/revealjs.Rmd
vignettes/style.css
vignettes/test-piecewise.png
