plot.EventLogger: plot.EventLogger Generic plot method for EventLogger class as...

In PoonLab/twt: treeswithintrees

plot.EventLogger Generic plot method for EventLogger class as an S3 object. Converts the EventLogger object into an ape:phylo S3 object.

Description

plot.EventLogger Generic plot method for EventLogger class as an S3 object. Converts the EventLogger object into an ape:phylo S3 object.

Usage

## S3 method for class 'EventLogger'
plot(eventlog, transmissions = T, migrations = T, transitions = T, ...)

Arguments

eventlog:	R6 object of class EventLogger
transmissions:	if TRUE, display transmission events on inner tree plot.
migrations:	if TRUE, display migration events on inner tree plot.

Examples

path <- system.file('extdata', 'structSI.yaml', package='twt')
settings <- yaml.load_file(path)
structSI <- Model$new(settings)
run <- sim.outer.tree(structSI)
eventlog <- sim.inner.tree(run)

# orange dots represent migration events
plot(eventlog, transmissions=T, migrations=T)

PoonLab/twt documentation built on Nov. 7, 2024, 4:18 a.m.