Man pages for PoonLab/twt
treeswithintrees
| as.phylo.EventLogger | as.phylo |
| as.phylo.Run | as.phylo.Run Generic method for Run objects - convert Run... |
| attach.tree | attach.tree |
| Compartment | Compartment |
| CompartmentType | CompartmentType |
| dot-assign.events | .assign.events |
| dot-get.rate.matrices | .get.rate.matrices |
| dot-plot.dynamics | .plot.dynamics Make a stairstep plot of the population... |
| dot-plot.outer.tree | .plot.outer.tree |
| dot-reorder.events | .reorder.events |
| dot-reorder.inner.events | .reorder.inner.events Recursive helper function to generate... |
| dot-resolve.bottleneck | .resolve.bottleneck |
| dot-resolve.coalescent | .resolve.coalescent |
| dot-resolve.migration | .resolve.migration |
| dot-resolve.transition | .resolve.transition |
| dot-resolve.transmission | .resolve.transmission |
| dot-rexp.coal | rexp.coal |
| dot-sample.outer.events | .sample.outer.events |
| dot-scale.contact.rates | .scale.contact.rates |
| EventLogger | EventLogger |
| Lineage | Lineage |
| load.outer.tree | load.outer.tree |
| Model | Model |
| plot.EventLogger | plot.EventLogger Generic plot method for EventLogger class as... |
| plot.Run | plot.Run |
| print.EventLogger | print.EventLogger |
| print.Model | print.Model S3 class function to display contents of a Model... |
| Run | Run |
| sample.coalescents | sample.coalescents |
| sim.inner.tree | sim.inner.tree |
| sim.outer.tree | sim.outer.tree |
| summary.Model | summary.Model S3 class function to summarize a Model object -... |
