R/updatestatus.R

In PrecisionLivestockManagement/AppAnita: This package contains functions for use with Anita's App

#' Retrieves weather data from the AnitaWeather collection in the PLMResearch database.
#'
#' This function retrieves weather data from Anita's Belmont trial to the MongoDB database.
#' @name updatestatus
#' @param status the status
#' @param username username for use with Anita's App
#' @param password password for use with Anita's App
#' @return returns the paddock spatial information
#' @author Anita Chang \email{a.chang@@cqu.edu.au}
#' @import mongolite
#' @import dplyr
#' @import rgdal
#' @export


updatestatus <- function(RFID, status = NULL, notification = NULL, date = NULL, username = user, password = pass){

  if(is.null(username)||is.null(password)){
    username = keyring::key_list("DMMongoDB")[1,2]
    password =  keyring::key_get("DMMongoDB", username)}

  url <- sprintf("mongodb://%s:%s@datamuster-shard-00-00-8mplm.mongodb.net:27017,datamuster-shard-00-01-8mplm.mongodb.net:27017,datamuster-shard-00-02-8mplm.mongodb.net:27017/test?ssl=true&replicaSet=DataMuster-shard-0&authSource=admin", username, password)
  stat <- mongo(collection = "AnitaStatus", db = "PLMResearch", url = url, verbose = T)

  for (i in 1:length(RFID)){
    RFIDS <- sprintf('{"RFID":"%s"}', RFID[i])
    if(!is.null(status)){
      IDI <- sprintf('{"$set":{"status":"%s"}}', status[i])
      stat$update(RFIDS, IDI)
    }
    if(!is.null(notification)){
      IDI <- sprintf('{"$set":{"notifications":"%s"}}', notification[i])
      stat$update(RFIDS, IDI)
    }
    if(!is.null(date)){
      IDI <- sprintf('{"$set":{"calvingdate":"%s"}}', date[i])
      stat$update(RFIDS, IDI)
    }
  }
}