Files in PriceLab/MotifDb
An Annotated Collection of Protein-DNA Binding Sequence Motifs
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/MotifList-class.R
R/zzz.R
build.makefile
explore/motifMatchingDistributions/chip-matching.R
explore/motifMatchingDistributions/mmd.R
explore/motifMatchingDistributions/motif.meme
explore/newFlyFactor/UmassPGFE_PWMfreq_PublicDatasetA_20220210.txt
inst/extdata/ScerTF.RData
inst/extdata/SwissRegulon.RData
inst/extdata/cisbp.RData
inst/extdata/flyFactorSurvey.RData
inst/extdata/hPDI.RData
inst/extdata/hocomoco10.RData
inst/extdata/hocomoco11.RData
inst/extdata/homer.RData
inst/extdata/jaspar.RData
inst/extdata/jaspar2014.RData
inst/extdata/jaspar2016.RData
inst/extdata/jaspar2018.RData
inst/extdata/jaspar2022.RData
inst/extdata/jolma2013.RData
inst/extdata/stamlab.RData
inst/extdata/tfClass.tsv
inst/extdata/tfs/tfs-1683-lambert.RData
inst/extdata/uniprobe.RData
inst/makefile
inst/scripts/import/HOCOMOCO/import.R
inst/scripts/import/HOCOMOCO/import_functional_only_matrices.R
inst/scripts/import/HOCOMOCO/test.R
inst/scripts/import/HOCOMOCO/test.txt
inst/scripts/import/README
inst/scripts/import/ScerTF/import.R
inst/scripts/import/ScerTF/test.R
inst/scripts/import/SwissRegulon/import.R
inst/scripts/import/cisbp/import.R
inst/scripts/import/cisbp/test.R
inst/scripts/import/demo/demo.RData
inst/scripts/import/demo/import.R
inst/scripts/import/demo/md-raw.tsv
inst/scripts/import/demo/sample.pcm
inst/scripts/import/fbgns.RData
inst/scripts/import/flyFactorSurvey/import.R
inst/scripts/import/flyFactorSurvey/test.R
inst/scripts/import/hPDI/import.R
inst/scripts/import/hPDI/test.R
inst/scripts/import/hocomoco10/import.R
inst/scripts/import/homer/import.R
inst/scripts/import/importAll.R
inst/scripts/import/jaspar/import.R
inst/scripts/import/jaspar/test.R
inst/scripts/import/jaspar2014/import.R
inst/scripts/import/jaspar2014/test.R
inst/scripts/import/jaspar2016/.Rhistory
inst/scripts/import/jaspar2016/import.R
inst/scripts/import/jaspar2018/JASPAR2018_CORE_redundant_pfms_jaspar.txt
inst/scripts/import/jaspar2018/fetchMetaData.R
inst/scripts/import/jaspar2018/import.R
inst/scripts/import/jaspar2018/metaData.Rdata
inst/scripts/import/jaspar2022/JASPAR2022_CORE_non-redundant_pfms_jaspar.txt
inst/scripts/import/jaspar2022/JASPAR2022_CORE_redundant_pfms_jaspar.txt
inst/scripts/import/jaspar2022/fetchMetaData.R
inst/scripts/import/jaspar2022/import.R
inst/scripts/import/jaspar2022/jaspar2022.RData
inst/scripts/import/jaspar2022/metaData.RData
inst/scripts/import/jolma2013/import.R
inst/scripts/import/jolma2013/test.R
inst/scripts/import/stamlab/import.R
inst/scripts/import/stamlab/test.R
inst/scripts/import/uniprobe/import.R
inst/scripts/import/uniprobe/test.R
inst/unitTests/mouse.txt
inst/unitTests/single_matrices/cisbp_matrix.Rdata
inst/unitTests/single_matrices/uniprobe_matrix.Rdata
inst/unitTests/tbl.model.RData
inst/unitTests/test_MotifDb.R
inst/vanillaTest.R
man/MotifDb.Rd
man/MotifList-class.Rd
man/associateTranscriptionFactors.Rd
man/export.Rd
man/geneToMotif.Rd
man/motifToGene.Rd
man/query.Rd
man/subset.Rd
misc/hocomoco-v11/HOCOMOCOv11_full_HUMAN_mono_jaspar_format.txt
misc/hocomoco-v11/HOCOMOCOv11_full_annotation_HUMAN_mono.tsv
misc/hocomoco-v11/importV10.R
misc/hocomoco-v11/importV11.R
notInstalled/hidden/MotifDb-package.Rd
notInstalled/hidden/MotifList.Rd-hidden
notInstalled/hidden/ScerTF.Rd
notInstalled/hidden/flyFactorSurvey.Rd
notInstalled/hidden/hPDI.Rd
notInstalled/hidden/jaspar.Rd
notInstalled/hidden/matrices.Rd
notInstalled/hidden/tbl.md.Rd
notInstalled/hidden/uniprobe.Rd
tests/runTests.R
vignettes/GSM749704-CTCF-chipVsFimo.png
vignettes/MotifDb.Rmd
vignettes/makefile
vignettes/programmersGuide.txt
