Files in PriceLab/TrenaProject
TrenaProject - an abstract base class for all projects
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/TrenaProject.R
README.md
inst/extdata/covariates/dummyCovariates.RData
inst/extdata/expression/dummyExpressionSet_1.RData
inst/extdata/expression/dummyExpressionSet_2.RData
inst/extdata/geneInfoTable.RData
inst/extdata/geneInfoTable_hg38.RData
inst/extdata/geneInfoTable_mm10.RData
inst/extdata/genomeAnnotation/geneHancer.v4.7.allGenes.RData
inst/extdata/genomeAnnotation/manifest.yaml
inst/extdata/genomicRegions/ATAC-seq-erythropoiesis-d04_rep1.RData
inst/extdata/genomicRegions/ATAC-seq-erythropoiesis-d12_rep2.RData
inst/extdata/tbl.geneSym-ensembl-map.RData
inst/extdata/variants/someGene.region.vcf
inst/extdata/variants/tbl.snp.gwas.minimal.RData
inst/scripts/buildGeneInfoTable/buildGeneInfoTable.R
inst/scripts/buildGeneInfoTable/buildGeneInfoTable_mm10.R
inst/scripts/buildGeneInfoTable/mm10.biomart.table.cooked.RData
inst/scripts/buildGeneInfoTable/mm10.biomart.table.raw.RData
inst/unitTests/test_TrenaProject.R
makefile
man/TrenaProject-class.Rd
man/getAllTranscriptionFactors.Rd
man/getCovariateDataset.Rd
man/getCovariateDatasetNames.Rd
man/getDataDirectory.Rd
man/getExpressionMatrix.Rd
man/getExpressionMatrixNames.Rd
man/getFootprintDatabaseHost.Rd
man/getFootprintDatabaseNames.Rd
man/getFootprintDatabasePort.Rd
man/getGeneInfoTable.Rd
man/getGeneRegion.Rd
man/getGenome.Rd
man/getProjectName.Rd
man/getProximalPromoter.Rd
man/getRegionDatasetNames.Rd
man/getSupportedGenes.Rd
man/getTargetGene.Rd
man/getTranscriptsTable.Rd
man/getVariantDataset.Rd
man/getVariantDatasetNames.Rd
man/recognizedGene.Rd
man/setTargetGene.Rd
man/show.Rd
