TrenaGene-class: TrenaGene

In PriceLab/trenaGene: abstract base class

Description

TrenaGene and its (projected) subclasses provide convenient containers in which to collect trena-related aggregation of a gene's (a hierarchy of classes) including expression data, transcript and variant info, genomic and epigenomic context, trena models and/or the means to create them

Usage

TrenaGene(trenaGeneData)

Arguments

geneSymbol	A character string in standard HUGO nomenclature
genomeName	A string indicating the genome used by the Trena object. Currently, only human and mouse ("hg38","mm10") are supported
expressionDataDirectory	A string pointing to a collection of RData expression matrices
quiet	A logical indicating whether or not the Trena object should print output

Value

An object of the TrenaGene class

Examples

# Create a Trena object using the human hg38 genome
cola1a <- TrenaGene("COL1A1", "hg38")

PriceLab/trenaGene documentation built on May 4, 2019, 3:16 p.m.