Man pages for PriscillaBai-UTokyo/Priscilla
Priscilla
| batch_ttest | Do student T-test for many genes at the same time |
| correlation | correlation analysis between two range of columns from the... |
| correlationNumBar | draw barplot reveals the number of positive correlation and... |
| DESeq_Pris | DESeq analysis and return outputs |
| factor2num | Transform factor/character to numeric in a dataframe or... |
| heatmap_norm | normalization for heatmap input to obtain better heatmap plot |
| MCAN_bar | Microarray data normalization and compariason: bar plot |
| MCA_normalization | Microarray data normalization |
| mergeData | mergeData |
| multicox | Conduct multivariate cox analysis |
| multicoxColumnClean | Clean column with three or more variables for multivariable... |
| multiDataclean | multiDataclean |
| mylasso | mylasso |
| OriginalSet | Before coding, we should set these |
| PairCorHeatmap | Draw the heatmap of pairwise correlation |
| pairwise_correlation | Do pairwise correlation between any genes |
| pairwiseCorrelation | draw barplot reveals the number of positive correlation and... |
| Priscilla | Priscilla |
| probeMax | probeMax |
| TCGAclinical | download TCGA clinical data |
| TCGAclinical_clean | clean TCGA clinical data |
| TCGAdownload | download TCGA data |
| TCGA_ENSEMBL2Symbol | Tranform Ensembl to symbol in orignal TCGA expression matrix |
| TrainandTest | Divide train and test datasets in an expression matrix |
| Uni_cox | clean TCGA clinical data |
| volcanoplot | Draw volcano plot after DESeq |
