Files in ProMetIS/LATMX2
Multi-omics phenotyping of the LAT and MX2 knockout mice
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LATMX2.Rproj
NAMESPACE
NEWS
R/2_post_processed.R
R/allGenerics.R
R/common.R
R/constants.R
README.md
desktop.ini
inst/extdata/1_processed/clinics/phenomin.tsv
inst/extdata/1_processed/metabolomics_liver_c18hyper_pos/dataMatrix.tsv
inst/extdata/1_processed/metabolomics_liver_c18hyper_pos/sampleMetadata.tsv
inst/extdata/1_processed/metabolomics_liver_c18hyper_pos/variableMetadata.tsv
inst/extdata/1_processed/metabolomics_liver_hilic_neg/dataMatrix.tsv
inst/extdata/1_processed/metabolomics_liver_hilic_neg/sampleMetadata.tsv
inst/extdata/1_processed/metabolomics_liver_hilic_neg/variableMetadata.tsv
inst/extdata/1_processed/metabolomics_plasma_c18acqui_neg/dataMatrix.tsv
inst/extdata/1_processed/metabolomics_plasma_c18acqui_neg/sampleMetadata.tsv
inst/extdata/1_processed/metabolomics_plasma_c18acqui_neg/variableMetadata.tsv
inst/extdata/1_processed/metabolomics_plasma_c18acqui_pos/dataMatrix.tsv
inst/extdata/1_processed/metabolomics_plasma_c18acqui_pos/sampleMetadata.tsv
inst/extdata/1_processed/metabolomics_plasma_c18acqui_pos/variableMetadata.tsv
inst/extdata/1_processed/metabolomics_plasma_c18hyper_pos/dataMatrix.tsv
inst/extdata/1_processed/metabolomics_plasma_c18hyper_pos/sampleMetadata.tsv
inst/extdata/1_processed/metabolomics_plasma_c18hyper_pos/variableMetadata.tsv
inst/extdata/1_processed/metabolomics_plasma_hilic_neg/dataMatrix.tsv
inst/extdata/1_processed/metabolomics_plasma_hilic_neg/sampleMetadata.tsv
inst/extdata/1_processed/metabolomics_plasma_hilic_neg/variableMetadata.tsv
inst/extdata/1_processed/mice_id.tsv
inst/extdata/1_processed/proteomics_liver/Liver Proteomics Strasbourg_20190128.xlsx
inst/extdata/1_processed/proteomics_plasma/RAW_Plasma_proteomics_Toulouse_Prostar_imputation_stat_190222.xlsx
inst/extdata/2_post_processed/clinics/dataMatrix.tsv
inst/extdata/2_post_processed/clinics/sampleMetadata.tsv
inst/extdata/2_post_processed/clinics/variableMetadata.tsv
inst/extdata/2_post_processed/metabolomics_liver_c18hyper_pos/dataMatrix.tsv
inst/extdata/2_post_processed/metabolomics_liver_c18hyper_pos/sampleMetadata.tsv
inst/extdata/2_post_processed/metabolomics_liver_c18hyper_pos/variableMetadata.tsv
inst/extdata/2_post_processed/metabolomics_liver_hilic_neg/dataMatrix.tsv
inst/extdata/2_post_processed/metabolomics_liver_hilic_neg/sampleMetadata.tsv
inst/extdata/2_post_processed/metabolomics_liver_hilic_neg/variableMetadata.tsv
inst/extdata/2_post_processed/metabolomics_plasma_c18acqui_neg/dataMatrix.tsv
inst/extdata/2_post_processed/metabolomics_plasma_c18acqui_neg/sampleMetadata.tsv
inst/extdata/2_post_processed/metabolomics_plasma_c18acqui_neg/variableMetadata.tsv
inst/extdata/2_post_processed/metabolomics_plasma_c18acqui_pos/dataMatrix.tsv
inst/extdata/2_post_processed/metabolomics_plasma_c18acqui_pos/sampleMetadata.tsv
inst/extdata/2_post_processed/metabolomics_plasma_c18acqui_pos/variableMetadata.tsv
inst/extdata/2_post_processed/metabolomics_plasma_c18hyper_pos/dataMatrix.tsv
inst/extdata/2_post_processed/metabolomics_plasma_c18hyper_pos/sampleMetadata.tsv
inst/extdata/2_post_processed/metabolomics_plasma_c18hyper_pos/variableMetadata.tsv
inst/extdata/2_post_processed/metabolomics_plasma_hilic_neg/dataMatrix.tsv
inst/extdata/2_post_processed/metabolomics_plasma_hilic_neg/sampleMetadata.tsv
inst/extdata/2_post_processed/metabolomics_plasma_hilic_neg/variableMetadata.tsv
inst/extdata/2_post_processed/proteomics_liver/dataMatrix.tsv
inst/extdata/2_post_processed/proteomics_liver/sampleMetadata.tsv
inst/extdata/2_post_processed/proteomics_liver/variableMetadata.tsv
inst/extdata/2_post_processed/proteomics_plasma/dataMatrix.tsv
inst/extdata/2_post_processed/proteomics_plasma/sampleMetadata.tsv
inst/extdata/2_post_processed/proteomics_plasma/variableMetadata.tsv
inst/extdata/3_statistics_intraomics/clinics/dataMatrix.tsv
inst/extdata/3_statistics_intraomics/clinics/sampleMetadata.tsv
inst/extdata/3_statistics_intraomics/clinics/variableMetadata.tsv
inst/extdata/3_statistics_intraomics/metabolomics_liver_c18hyper_pos/dataMatrix.tsv
inst/extdata/3_statistics_intraomics/metabolomics_liver_c18hyper_pos/sampleMetadata.tsv
inst/extdata/3_statistics_intraomics/metabolomics_liver_c18hyper_pos/variableMetadata.tsv
inst/extdata/3_statistics_intraomics/metabolomics_liver_hilic_neg/dataMatrix.tsv
inst/extdata/3_statistics_intraomics/metabolomics_liver_hilic_neg/sampleMetadata.tsv
inst/extdata/3_statistics_intraomics/metabolomics_liver_hilic_neg/variableMetadata.tsv
inst/extdata/3_statistics_intraomics/metabolomics_plasma_c18acqui_neg/dataMatrix.tsv
inst/extdata/3_statistics_intraomics/metabolomics_plasma_c18acqui_neg/sampleMetadata.tsv
inst/extdata/3_statistics_intraomics/metabolomics_plasma_c18acqui_neg/variableMetadata.tsv
inst/extdata/3_statistics_intraomics/metabolomics_plasma_c18acqui_pos/dataMatrix.tsv
inst/extdata/3_statistics_intraomics/metabolomics_plasma_c18acqui_pos/sampleMetadata.tsv
inst/extdata/3_statistics_intraomics/metabolomics_plasma_c18acqui_pos/variableMetadata.tsv
inst/extdata/3_statistics_intraomics/metabolomics_plasma_c18hyper_pos/dataMatrix.tsv
inst/extdata/3_statistics_intraomics/metabolomics_plasma_c18hyper_pos/sampleMetadata.tsv
inst/extdata/3_statistics_intraomics/metabolomics_plasma_c18hyper_pos/variableMetadata.tsv
inst/extdata/3_statistics_intraomics/metabolomics_plasma_hilic_neg/dataMatrix.tsv
inst/extdata/3_statistics_intraomics/metabolomics_plasma_hilic_neg/sampleMetadata.tsv
inst/extdata/3_statistics_intraomics/metabolomics_plasma_hilic_neg/variableMetadata.tsv
inst/extdata/3_statistics_intraomics/proteomics_liver/dataMatrix.tsv
inst/extdata/3_statistics_intraomics/proteomics_liver/sampleMetadata.tsv
inst/extdata/3_statistics_intraomics/proteomics_liver/variableMetadata.tsv
inst/extdata/3_statistics_intraomics/proteomics_plasma/dataMatrix.tsv
inst/extdata/3_statistics_intraomics/proteomics_plasma/sampleMetadata.tsv
inst/extdata/3_statistics_intraomics/proteomics_plasma/variableMetadata.tsv
inst/extdata/4_statistics_integrative/clinics/dataMatrix.tsv
inst/extdata/4_statistics_integrative/clinics/sampleMetadata.tsv
inst/extdata/4_statistics_integrative/clinics/variableMetadata.tsv
inst/extdata/4_statistics_integrative/metabolomics_liver_c18hyper_pos/dataMatrix.tsv
inst/extdata/4_statistics_integrative/metabolomics_liver_c18hyper_pos/sampleMetadata.tsv
inst/extdata/4_statistics_integrative/metabolomics_liver_c18hyper_pos/variableMetadata.tsv
inst/extdata/4_statistics_integrative/metabolomics_liver_hilic_neg/dataMatrix.tsv
inst/extdata/4_statistics_integrative/metabolomics_liver_hilic_neg/sampleMetadata.tsv
inst/extdata/4_statistics_integrative/metabolomics_liver_hilic_neg/variableMetadata.tsv
inst/extdata/4_statistics_integrative/metabolomics_plasma_c18acqui_neg/dataMatrix.tsv
inst/extdata/4_statistics_integrative/metabolomics_plasma_c18acqui_neg/sampleMetadata.tsv
inst/extdata/4_statistics_integrative/metabolomics_plasma_c18acqui_neg/variableMetadata.tsv
inst/extdata/4_statistics_integrative/metabolomics_plasma_c18acqui_pos/dataMatrix.tsv
inst/extdata/4_statistics_integrative/metabolomics_plasma_c18acqui_pos/sampleMetadata.tsv
inst/extdata/4_statistics_integrative/metabolomics_plasma_c18acqui_pos/variableMetadata.tsv
inst/extdata/4_statistics_integrative/metabolomics_plasma_c18hyper_pos/dataMatrix.tsv
inst/extdata/4_statistics_integrative/metabolomics_plasma_c18hyper_pos/sampleMetadata.tsv
inst/extdata/4_statistics_integrative/metabolomics_plasma_c18hyper_pos/variableMetadata.tsv
inst/extdata/4_statistics_integrative/metabolomics_plasma_hilic_neg/dataMatrix.tsv
inst/extdata/4_statistics_integrative/metabolomics_plasma_hilic_neg/sampleMetadata.tsv
inst/extdata/4_statistics_integrative/metabolomics_plasma_hilic_neg/variableMetadata.tsv
inst/extdata/4_statistics_integrative/proteomics_liver/dataMatrix.tsv
inst/extdata/4_statistics_integrative/proteomics_liver/sampleMetadata.tsv
inst/extdata/4_statistics_integrative/proteomics_liver/variableMetadata.tsv
inst/extdata/4_statistics_integrative/proteomics_plasma/dataMatrix.tsv
inst/extdata/4_statistics_integrative/proteomics_plasma/sampleMetadata.tsv
inst/extdata/4_statistics_integrative/proteomics_plasma/variableMetadata.tsv
inst/extdata/5a_aggregated_LAT/clinics/dataMatrix.tsv
inst/extdata/5a_aggregated_LAT/clinics/sampleMetadata.tsv
inst/extdata/5a_aggregated_LAT/clinics/variableMetadata.tsv
inst/extdata/5a_aggregated_LAT/metabolomics_liver_c18hyper_pos/dataMatrix.tsv
inst/extdata/5a_aggregated_LAT/metabolomics_liver_c18hyper_pos/sampleMetadata.tsv
inst/extdata/5a_aggregated_LAT/metabolomics_liver_c18hyper_pos/variableMetadata.tsv
inst/extdata/5a_aggregated_LAT/metabolomics_liver_hilic_neg/dataMatrix.tsv
inst/extdata/5a_aggregated_LAT/metabolomics_liver_hilic_neg/sampleMetadata.tsv
inst/extdata/5a_aggregated_LAT/metabolomics_liver_hilic_neg/variableMetadata.tsv
inst/extdata/5a_aggregated_LAT/metabolomics_plasma_c18acqui_neg/dataMatrix.tsv
inst/extdata/5a_aggregated_LAT/metabolomics_plasma_c18acqui_neg/sampleMetadata.tsv
inst/extdata/5a_aggregated_LAT/metabolomics_plasma_c18acqui_neg/variableMetadata.tsv
inst/extdata/5a_aggregated_LAT/metabolomics_plasma_c18acqui_pos/dataMatrix.tsv
inst/extdata/5a_aggregated_LAT/metabolomics_plasma_c18acqui_pos/sampleMetadata.tsv
inst/extdata/5a_aggregated_LAT/metabolomics_plasma_c18acqui_pos/variableMetadata.tsv
inst/extdata/5a_aggregated_LAT/metabolomics_plasma_c18hyper_pos/dataMatrix.tsv
inst/extdata/5a_aggregated_LAT/metabolomics_plasma_c18hyper_pos/sampleMetadata.tsv
inst/extdata/5a_aggregated_LAT/metabolomics_plasma_c18hyper_pos/variableMetadata.tsv
inst/extdata/5a_aggregated_LAT/metabolomics_plasma_hilic_neg/dataMatrix.tsv
inst/extdata/5a_aggregated_LAT/metabolomics_plasma_hilic_neg/sampleMetadata.tsv
inst/extdata/5a_aggregated_LAT/metabolomics_plasma_hilic_neg/variableMetadata.tsv
inst/extdata/5a_aggregated_LAT/proteomics_liver/dataMatrix.tsv
inst/extdata/5a_aggregated_LAT/proteomics_liver/sampleMetadata.tsv
inst/extdata/5a_aggregated_LAT/proteomics_liver/variableMetadata.tsv
inst/extdata/5a_aggregated_LAT/proteomics_plasma/dataMatrix.tsv
inst/extdata/5a_aggregated_LAT/proteomics_plasma/sampleMetadata.tsv
inst/extdata/5a_aggregated_LAT/proteomics_plasma/variableMetadata.tsv
inst/extdata/5b_aggregated_MX2/clinics/dataMatrix.tsv
inst/extdata/5b_aggregated_MX2/clinics/sampleMetadata.tsv
inst/extdata/5b_aggregated_MX2/clinics/variableMetadata.tsv
inst/extdata/5b_aggregated_MX2/metabolomics_liver_c18hyper_pos/dataMatrix.tsv
inst/extdata/5b_aggregated_MX2/metabolomics_liver_c18hyper_pos/sampleMetadata.tsv
inst/extdata/5b_aggregated_MX2/metabolomics_liver_c18hyper_pos/variableMetadata.tsv
inst/extdata/5b_aggregated_MX2/metabolomics_liver_hilic_neg/dataMatrix.tsv
inst/extdata/5b_aggregated_MX2/metabolomics_liver_hilic_neg/sampleMetadata.tsv
inst/extdata/5b_aggregated_MX2/metabolomics_liver_hilic_neg/variableMetadata.tsv
inst/extdata/5b_aggregated_MX2/metabolomics_plasma_c18acqui_neg/dataMatrix.tsv
inst/extdata/5b_aggregated_MX2/metabolomics_plasma_c18acqui_neg/sampleMetadata.tsv
inst/extdata/5b_aggregated_MX2/metabolomics_plasma_c18acqui_neg/variableMetadata.tsv
inst/extdata/5b_aggregated_MX2/metabolomics_plasma_c18acqui_pos/dataMatrix.tsv
inst/extdata/5b_aggregated_MX2/metabolomics_plasma_c18acqui_pos/sampleMetadata.tsv
inst/extdata/5b_aggregated_MX2/metabolomics_plasma_c18acqui_pos/variableMetadata.tsv
inst/extdata/5b_aggregated_MX2/metabolomics_plasma_c18hyper_pos/dataMatrix.tsv
inst/extdata/5b_aggregated_MX2/metabolomics_plasma_c18hyper_pos/sampleMetadata.tsv
inst/extdata/5b_aggregated_MX2/metabolomics_plasma_c18hyper_pos/variableMetadata.tsv
inst/extdata/5b_aggregated_MX2/metabolomics_plasma_hilic_neg/dataMatrix.tsv
inst/extdata/5b_aggregated_MX2/metabolomics_plasma_hilic_neg/sampleMetadata.tsv
inst/extdata/5b_aggregated_MX2/metabolomics_plasma_hilic_neg/variableMetadata.tsv
inst/extdata/5b_aggregated_MX2/proteomics_liver/dataMatrix.tsv
inst/extdata/5b_aggregated_MX2/proteomics_liver/sampleMetadata.tsv
inst/extdata/5b_aggregated_MX2/proteomics_liver/variableMetadata.tsv
inst/extdata/5b_aggregated_MX2/proteomics_plasma/dataMatrix.tsv
inst/extdata/5b_aggregated_MX2/proteomics_plasma/sampleMetadata.tsv
inst/extdata/5b_aggregated_MX2/proteomics_plasma/variableMetadata.tsv
inst/extdata/palette.tsv
man/imputation_metrics.Rd
man/order_mset.Rd
man/subsetting.Rd
tests/testthat/test_2_post_processed.R
tests/testthat/test_3_statistics_intraomics.R
vignettes/2_post_processed.Rmd
vignettes/3_statistics_intraomics.Rmd
vignettes/4_statistics_integrative.Rmd
vignettes/5_aggregated.Rmd
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