package: Full genome sequences for Caenorhabditis elegans (UCSC...

In Przemol/BSgenome.Celegans.UCSC.ce10: Full genome sequences for Caenorhabditis elegans (UCSC version ce10)

Description

Full genome sequences for Caenorhabditis elegans (Worm) as provided by UCSC (ce10, Oct. 2010) and stored in Biostrings objects.

Note

This BSgenome data package was made from the following source data files:

chromFa.tar.gz
upstream1000.fa.gz
upstream2000.fa.gz
upstream5000.fa.gz
from ftp://hgdownload.cse.ucsc.edu/goldenPath/ce10/bigZips/

  

See ?BSgenomeForge and the BSgenomeForge vignette (vignette("BSgenomeForge")) in the BSgenome software package for how to make a BSgenome data package.

Author(s)

The Bioconductor Dev Team

See Also

• BSgenome objects and the available.genomes function in the BSgenome software package.

• DNAString objects in the Biostrings package.

• The BSgenomeForge vignette (vignette("BSgenomeForge")) in the BSgenome software package for how to make a BSgenome data package.

Examples

BSgenome.Celegans.UCSC.ce10
genome <- BSgenome.Celegans.UCSC.ce10
seqlengths(genome)
genome$chrI  # same as genome[["chrI"]]

## See the GenomeSearching vignette in the BSgenome software
## package for some examples of genome-wide motif searching using
## Biostrings and the BSgenome data packages:
if (interactive())
    vignette("GenomeSearching", package="BSgenome")

Przemol/BSgenome.Celegans.UCSC.ce10 documentation built on May 8, 2019, 3:46 a.m.