PlotSetList-class: PlotSetList Reference Class

In Przemol/seqplots-release: An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps.

Description

PlotSetList Reference Class

Fields

data

a nested list holding the data

annotations

list of annotations

Methods

get(i)

Subseting method

info()

Outputs data.frame describing the content of PlotSetList

npaires()

Outputs the number (integer) of PlotSetPairs in the PlotSetList

plot(what = "a", ...)

Plot the PlotSetList, i.e. all PlotSetPairs in the list. See plot for datails.

Subsetting

x is an object of PlotSetList class:

• x[1:2] produces PlotSetList with 2 feature/tracks pairs.

• x[[1]] produces single PlotSetPair.

See Also

Other classes: MotifSetup, MotifSetup-class; PlotSetArray, PlotSetArray-class; PlotSetPair, PlotSetPair-class

Przemol/seqplots-release documentation built on May 8, 2019, 3:47 a.m.