Man pages for QTCAT/AMPRIL
AMPRIL helpers
| allele.freq | Allele frequency |
| AMPRIL-package | methods for the AMPRIL population |
| as.matrix-ibdData-method | ibdData as matrix |
| chiSqTest2Loci.ibd | Chi square test |
| chiSqTest.ibd | Chi square test |
| dim-ibdData-method | Get dim |
| dimnames-ibdData-method | Get dimnames |
| getPos | Get position from ibdData |
| grm.ibd | IBD similarity |
| het.freq | Heterozygosity |
| ibdData-class | Class "ibdData" for a IBD-block matrix (S4 class) |
| na.freq | Frequency of NAs in ibdData |
| purifyLoci | Purify loci |
| read.ibdData | read snp data as ibdData object |
| spop.names | Sub-population names |
| sspop.names | Sub-sub-population names |
| sub-ibdData-ANY-ANY-missing-method | Sub ibdData |
| subsetPos | IBD subseting by position |
