Files in Queen0044/HiCImpute
HiCImpute: An R Package Implementing "Bayesian Hierarchical Model for Identifying Structural Zeros and Enhancing Single-cell Hi-C Data"
DESCRIPTION
HiCImpute.Rproj
NAMESPACE
R/MCMCImpute.R
R/PTDO80.R
R/PTSZ95.R
R/R.Rproj
R/RcppExports.R
R/SEVI.R
R/SOVI.R
R/correctfac.R
R/fig_label.R
R/matrow.R
R/mattovec.R
R/neivar.R
R/scHiC_Kmeans.R
R/scHiC_ROC.R
R/scHiC_assess.R
R/scHiC_hm.R
R/scHiC_simulate.R
R/scHiC_tSNE.R
README.Rmd
README.md
data/GSE117874_chr1_wo_diag.rda
data/GSE117874_imp.rda
data/K562_T1_2k.rda
data/K562_T1_2k_true.rda
data/K562_T1_4k.rda
data/K562_T1_4k_3D_array.rda
data/K562_T1_4k_list.rda
data/K562_T1_4k_true.rda
data/K562_T1_7k.rda
data/K562_T1_7k_true.rda
data/K562_T2_2k.rda
data/K562_T2_2k_true.rda
data/K562_T2_4k.rda
data/K562_T2_4k_true.rda
data/K562_T2_7k.rda
data/K562_T2_7k_true.rda
data/K562_T3_2k.rda
data/K562_T3_2k_true.rda
data/K562_T3_4k.rda
data/K562_T3_4k_true.rda
data/K562_T3_7k.rda
data/K562_T3_7k_true.rda
data/K562_bulk.rda
data/T1_4k_result.rda
data/T1_7k_res.rda
data/T1_7k_res.rdata
data/coord3D.rda
data/m.rdata
data/simba123_imp.rda
data/simudat.rdata
data/simudat_res.rdata
data/simudat_true.rdata
data/str1.rdata
man/MCMCImpute.Rd
man/PTSZ95.Rd
man/SEVI.Rd
man/SOVI.Rd
man/scHiC_Kmeans.Rd
man/scHiC_ROC.Rd
man/scHiC_assess.Rd
man/scHiC_hm.Rd
man/scHiC_simulate.Rd
man/scHiC_tSNE.Rd
src/HiCImpute.so
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/RcppExports.o
src/init.c
src/init.o
src/oneimpute.cpp
src/oneimpute.o
vignettes/HiCImpute_manual.pdf
vignettes/HiCImpute_vignettes.Rmd
vignettes/HiCImpute_vignettes.pdf
