PTSZ95: This function calculates PTDO when fix PTSZ=0.95.
In Queen0044/HiCImpute: HiCImpute: An R Package Implementing "Bayesian Hierarchical Model for Identifying Structural Zeros and Enhancing Single-cell Hi-C Data"
PTSZ95 R Documentation
This function calculates PTDO when fix PTSZ=0.95.
Description
This function calculates PTDO when fix PTSZ=0.95.
Usage
PTSZ95(observed, expected, result)
Arguments
observed
Observed single cells matrix with each column being the upper triangular of a single cell.
expected
Underline true counts from simulation.
result
Result form MCMCImpute function.
Value
A vector of PTDO and its SD when fixing PTSZ to be 0.95, and the threshold used in that case.
Examples
PTSZ95(observed=K562_T1_7k, expected=K562_1_true, result=T1_7k_res)
Queen0044/HiCImpute documentation built on Oct. 9, 2022, 9:30 a.m.
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| PTSZ95 | R Documentation |
This function calculates PTDO when fix PTSZ=0.95.
Description
This function calculates PTDO when fix PTSZ=0.95.
Usage
PTSZ95(observed, expected, result)
Arguments
observed |
Observed single cells matrix with each column being the upper triangular of a single cell. |
expected |
Underline true counts from simulation. |
result |
Result form MCMCImpute function. |
Value
A vector of PTDO and its SD when fixing PTSZ to be 0.95, and the threshold used in that case.
Examples
PTSZ95(observed=K562_T1_7k, expected=K562_1_true, result=T1_7k_res)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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