In R-Lum/Luminescence: Comprehensive Luminescence Dating Data Analysis

Changes in version r RLumBuild::.get_pkg_version() (r Sys.Date())

New functions

Bugfixes

Internals

Changes in version 0.9.25 (2024-09-12)

This package version requires R >= 4.3

New functions

• read_HeliosOSL2R(): New import function to support the new zero rad Helios luminescence reader and its .osl file format. The output is an RLum.Analysis-class object.

Bugfixes

analyse_baSAR()

• Fix #183 addressing an edge-case crash when the function was called on an object containing no records of the appropriate type (#184, @mcol).

analyse_FadingMeasurements()

• Add ... support to disable the blue trend line via plot.trend = FALSE
• Fix #175 to deal gracefully with the case when the size of Lx and Tx doesn't match (#192, @mcol).

analyse_portableOSL()

• Function did not respect argument main; fixed.

convert_Wavelength2Energy()

• Fix #133 addressing cases where R throws an uncontained error when R drops the object structure in very rare cases (#134; thanks @mcol)

calc_Huntley2006()

• Improve success rate of GOK fitting of the unfaded data using a two step approach: first an exponential fit is applied then this values are used as start parameters.

calc_Statistics()

• The skewness and kurtosis depended on number of MC samples (#122); fixed with #123 (thanks to @mcol)

calc_TLLxTxRatio()

• Function crashed for Tx.data.background = NULL (#129); fixed with #130 thanks to @mcol

calc_WodaFuchs2008()

• The function now officially supports numeric vectors and single-column data frames as input (#200).
• The function computed the number of breaks for the histogram incorrectly (#197, fixed with #198).
• The function now supports more types of RLum.Results objects without crashing, although if the object contains only one data point it will stop immediately to avoid problems with nls() (#199, fixed in #219).

extract_IrradiationTimes()

• If a BIN/BINX-file is provided, the function will now check that it contains the same amount of data as the corresponding XSYG file a bit earlier than before, thus avoiding a possible crash (#228, fixed in #229).

fit_CWCurve()

• Argument output.path has been removed, and a warning is raised when attempting to use it (#207, fixed in #209).

fit_EmissionSpectra()

• Parameter input_scale was not correctly propagated when the function would self-call (#160, @mcol).

fit_OSLLifeTimes()

• The validation of the minimum dataset size didn't account for the use of the signal.range argument (#182, fixed by #195, @mcol).

fit_SurfaceExposure()

• Fix #162 to remove a dimension mismatch if the input data contained NAs, which would generate unexpected warnings (#163, @mcol).
• The function doesn't stop anymore with an error if called on an RLum.Results object (#165, @mcol).

plot_AbanicoPlot()

• Argument plot.ratio will now throw an error on non-positive numerical values (#221, fixed in #222).
• The function doesn't crash anymore when setting interactive = TRUE (#220, fixed in #233).

plot_DetPlot()

• Argument signal.integral.max is now enforced to be greater than signal.integral.min, as otherwise the computation of the number of channels would produce Inf (#203, fixed in #206).
• Fix a crash when using option analyse_function = "analyse_pIRIRSequence" (#210, fixed in #211).

plot_GrowthCurve()

• The function now calculates the relative saturation (n/N) using the ratio of the two integrates. The value is part of the output table.
• Argument na.rm has been removed: as of version 0.9.23, it was defunct and only accepted TRUE as valid value and produced an error otherwise, so there is no effective change in behaviour (#137, fixed in #214).

plot_Histogram()

• The function doesn't crash anymore when setting interactive = TRUE (#186, fixed in #231).

plot_KDE()

• It now officially supports numeric vectors and single-column data frames, for which it assumes that the De error at each measurement is 10^-9 (#189, fixed in #194, @mcol).

plot_NRt()

• The function reports an helpful message rather than crashing when applied to an object of unexpected type or when there is a mismatch in time values (#177, fixed with #179 by @mcol).

plot_RadialPlot()

• The function doesn't crash anymore when a single-column data frame is provided (#191, fixed in #212).

plot_RLum.Data.Analysis()

• The function now supports all arguments from plot_RLum.Data.Spectrum(); before it had only basic functionality for RLum.Data.Spectrum-class data.

plot_RLum.Data.Spectrum()

• The plot function can now handle non-increasing column values for plotting (with a warning).

read_BIN2R()

• ignore.RECTYPE now supports numeric values, e.g., 128. Records for this type will be ignored during import.
• BINX-files with RECTYPE = 128 will not crash anymore, thanks for asking Anna-Maartje Boer and replying Karsten Bracht.
• The function now stops graciously when attempting to read an empty file (#225, fixed in #226).

read_PSL2R()

• The function is out of the beta status, hence the flag was removed.
• The RLum.Analysis-class object returned by the function gained a new element Sequence, which is a data frame. with the measured sequence. This way, if the original sequence was lost, it can still be extracted from the .psl data.
• If no .psl file was found the function got trapped in an infinite loop (#127); fixed with #128 (thanks to @mcol)

read_XSYG2R()

• Fix spectrometer data import for basically broken files.

read_Daybreak2R()

• Fix #135 to improve detection of non-ASCII files (#140, @mcol).

Risoe.BINfileData2RLum.Analysis()

• Fix a crash when reading an empty Risoe.BINfileData input (#215, fixed in

224).

Internals

• New internal function + tests added .get_named_list_element(). It just does what the names says.

R-Lum/Luminescence documentation built on Sept. 15, 2024, 8 a.m.