gtsummary_wrappers: A gtsummary wrapper function that takes a gtsummary object...

In R4EPI/tuni: Tables for Epidemiological Analysis

A gtsummary wrapper function that takes a gtsummary object and removes a column from the table body by column name

Description

A gtsummary wrapper function that takes a gtsummary object and removes a column from the table body by column name

A gtsummary wrapper function that takes a data frame and adds cross tabs by exposure and outcome

A function that adds mh odds ratio to an existing gtsummary object with same dimensions (will add to this later.)

Usage

gt_remove_stat(gts_object, col_name = "stat_0")

add_crosstabs(
  data,
  exposure,
  outcome,
  case_reference = "outcome",
  var_name = NULL,
  show_overall = TRUE,
  exposure_label = NULL,
  outcome_label = NULL,
  var_label = NULL,
  two_by_two = FALSE,
  gt_statistic = "{n}",
  show_N_header = FALSE
)

gt_mh_odds(
  data,
  exposure,
  outcome,
  strata,
  exposure_label = NULL,
  outcome_label = NULL,
  strata_label = NULL
)

Arguments

gts_object	A data frame, passed by the gtsummary::add_stat function
col_name	the column name from the gtsummary object's table_body to remove
data	A data frame with linelist-style individual-level case data
exposure	column name to use as the exposure variable, must be logical class
outcome	column name to use as the outcome variable, must be logical class
show_overall	Logical argument to include overall column in gtsummary output; defaults to TRUE
exposure_label	label for exposure variable
outcome_label	label for outcome variable
variable	Name of a variable as the outcome of interest, passed by the gtsummary::add_stat function (e.g. illness)
by	Name of a variable for stratifying, passed by the gtsummary::add_stat function (e.g. illness). #'@param population the number of individuals in the population, passed to epitabulate::mortality_rate
...	additional params that may be passed from gtsummary functions.

Value

a gtsummary object without the named column

gtsummary object with case and control counts tabulated by exposure, along with a crude overall odds ratio and odds using the Cochran-Mantel-Haenszel test with 95% confidence interval (https://cran.r-project.org/web/packages/samplesizeCMH/vignettes/samplesizeCMH-introduction.html)

R4EPI/tuni documentation built on March 20, 2023, 4:37 p.m.