Man pages for REDUS-IMR/REDUStools
REDUS helper toolkits
| doGenerate | Generate an html output consists of plots and table. |
| doGenReport | Automatic report generation of plots and table from a... |
| genStatusHTML | Generate status matrix for the survey timeseries processing. |
| getErrorInfo | Get error information of a specific item in the matrix. |
| getREDUSRootDir | Get REDUS work directory (as defined in the option file) |
| getSTSList | Load the available STS names from IMR NMD. |
| getTimeSeriesDir | Get the time series directory path |
| loadSTS | Load the processed REDUS time series database. |
| loadTimeSeriesStatus | Load time series status data. |
| preprocess | Start the pre-processing based on the given configuration... |
| processLenGrpHeader | Process a length grup header. |
| processRstoxSTS | Process survey time series using Rstox. |
| read.surveys.with.negative | Function to read ices survey format. Copied from:... |
| stsPlot | Generate an STS plot using ggplot2. |
| stsTable | Generate an STS data table. |
| updateICESSurveyFile | Update or add a survey index abundance in an ICES format... |
