doGenerate | Generate an html output consists of plots and table. |
doGenReport | Automatic report generation of plots and table from a... |
genStatusHTML | Generate status matrix for the survey timeseries processing. |
getErrorInfo | Get error information of a specific item in the matrix. |
getREDUSRootDir | Get REDUS work directory (as defined in the option file) |
getSTSList | Load the available STS names from IMR NMD. |
getTimeSeriesDir | Get the time series directory path |
loadSTS | Load the processed REDUS time series database. |
loadTimeSeriesStatus | Load time series status data. |
preprocess | Start the pre-processing based on the given configuration... |
processLenGrpHeader | Process a length grup header. |
processRstoxSTS | Process survey time series using Rstox. |
read.surveys.with.negative | Function to read ices survey format. Copied from:... |
stsPlot | Generate an STS plot using ggplot2. |
stsTable | Generate an STS data table. |
updateICESSurveyFile | Update or add a survey index abundance in an ICES format... |
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