process_gene_signatures: Create a metadata table for gene signatures

In RGLab/AnalyteExplorer: Analyte Explorer

Create a metadata table for gene signatures

Description

Updates the gene symbols with Hugo, maps pathogen to the disease types studied, and standardizes timepoint unit to days in gene signatures table from HIPC Dashboard. This table is used to filter the gene signatures and display metadata about the selected gene signature (or gene) in the app.

Usage

process_gene_signatures()

Value

data.table

References

https://github.com/floratos-lab/hipc-dashboard-pipeline/tree/master/reformatted_data

Examples

## Not run: 
library(UpdateAnno)
gene_signatures <- process_data("gene_signatures")
validate(gene_signatures)
res <- update_table(gene_signatures)

## End(Not run)

RGLab/AnalyteExplorer documentation built on Jan. 29, 2023, 5:12 a.m.