normalize_rnaseq: Normalize raw RNA-seq data

In RGLab/HIPCMatrix: Microarray and RNA-seq Processing for ImmuneSpace

Normalize raw RNA-seq data

Description

RNA data will be normalized using the variance stabilizing transformation, as implemented by the DESeq2::vst function.

Usage

normalize_rnaseq(counts_mx, verbose = FALSE)

Arguments

counts_mx	matrix with raw counts, one column per sample, one row per feature
verbose	print verbose logging statements?

Value

a matrix with one row per feature and one column per sample.

RGLab/HIPCMatrix documentation built on Jan. 29, 2023, 5:13 a.m.