Files in RGLab/ImmuneSpaceR
A Thin Wrapper around the ImmuneSpace Data and Tools Portal
.Rbuildignore
.github/.gitignore
.github/pull_request_template.md
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/pr-commands.yaml
.gitignore
CONTRIBUTING.md
DESCRIPTION
ImmuneSpaceR.Rproj
NAMESPACE
NEWS.md
R/CreateConnection.R
R/ISCon-cytometry.R
R/ISCon-dataset.R
R/ISCon-geneExpression.R
R/ISCon-participantGroup.R
R/ISCon-plot.R
R/ISCon-utils.R
R/ISCon.R
R/ImmuneSpaceR.R
R/netrc.R
R/template.R
R/theme.R
R/utils.R
R/zzz.R
README.md
_pkgdown.yml
codecov.yml
inst/extdata/saved_con.rds
inst/rmarkdown/templates/ImmuneSpace/resources/IStemplate.css
inst/rmarkdown/templates/ImmuneSpace/resources/IStemplate.scss
inst/rmarkdown/templates/ImmuneSpace/resources/git-pre-commit-hook
inst/rmarkdown/templates/ImmuneSpace/resources/labkey-logo.png
inst/rmarkdown/templates/ImmuneSpace/skeleton/skeleton.Rmd
inst/rmarkdown/templates/ImmuneSpace/template.yaml
man/CreateConnection.Rd
man/ISpalette.Rd
man/ImmuneSpaceConnection.Rd
man/ImmuneSpaceR-package.Rd
man/check_netrc.Rd
man/figures/README-plot-1.png
man/figures/logo.png
man/interactive_netrc.Rd
man/loadConnection.Rd
man/template_IS.Rd
man/theme_IS.Rd
man/write_netrc.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/manualTests/manualTests.R
tests/manualTests/pgrpTesting.R
tests/testthat.R
tests/testthat/datasets/SDY180_fcs_control_files.rds
tests/testthat/datasets/SDY180_fcs_sample_files.rds
tests/testthat/datasets/SDY180_mbaa.rds
tests/testthat/datasets/SDY180_neut_ab_titer.rds
tests/testthat/datasets/SDY269_demographics.rds
tests/testthat/datasets/SDY269_elisa.rds
tests/testthat/datasets/SDY269_elispot.rds
tests/testthat/datasets/SDY269_fcs_analyzed_result.rds
tests/testthat/datasets/SDY269_gene_expression_files.rds
tests/testthat/datasets/SDY269_hai.rds
tests/testthat/datasets/SDY269_pcr.rds
tests/testthat/datasets/SDY28_hla_typing.rds
tests/testthat/helper-atStart.R
tests/testthat/helper-getDataset.R
tests/testthat/helper-getParticipantData.R
tests/testthat/test-CreateConnection.R
tests/testthat/test-cytometry.R
tests/testthat/test-dataIntegration.R
tests/testthat/test-downloadGEFiles.R
tests/testthat/test-getDataset.R
tests/testthat/test-getGEAnalysis.R
tests/testthat/test-getGEInputs.R
tests/testthat/test-getGEMatrix.R
tests/testthat/test-getParticipantData.R
tests/testthat/test-listDatasets.R
tests/testthat/test-listGEAnalysis.R
tests/testthat/test-listGEMatrices.R
tests/testthat/test-localPath.R
tests/testthat/test-plot.R
vignettes/Intro_to_ImmuneSpaceR.Rmd
vignettes/getDataset.Rmd
vignettes/getGEMatrix.Rmd
vignettes/img/createNetrc.gif
vignettes/img/getDataset-views.png
vignettes/img/netrcOverwriteOption.gif
vignettes/interactiveNetrc.Rmd
vignettes/report_SDY144.Rmd
vignettes/report_SDY180.Rmd
vignettes/report_SDY269.Rmd
