Files in RGLab/ImmuneSpaceR

A Thin Wrapper around the ImmuneSpace Data and Tools Portal

.Rbuildignore

.github/.gitignore

.github/pull_request_template.md

.github/workflows/R-CMD-check.yaml

.github/workflows/pkgdown.yaml

.github/workflows/pr-commands.yaml

.gitignore

CONTRIBUTING.md

DESCRIPTION

ImmuneSpaceR.Rproj

NAMESPACE

NEWS.md R/CreateConnection.R R/ISCon-cytometry.R R/ISCon-dataset.R R/ISCon-geneExpression.R R/ISCon-participantGroup.R R/ISCon-plot.R R/ISCon-utils.R R/ISCon.R R/ImmuneSpaceR.R R/netrc.R R/template.R R/theme.R R/utils.R R/zzz.R README.md

_pkgdown.yml

codecov.yml

inst/extdata/saved_con.rds

inst/rmarkdown/templates/ImmuneSpace/resources/IStemplate.css

inst/rmarkdown/templates/ImmuneSpace/resources/IStemplate.scss

inst/rmarkdown/templates/ImmuneSpace/resources/git-pre-commit-hook

inst/rmarkdown/templates/ImmuneSpace/resources/labkey-logo.png

inst/rmarkdown/templates/ImmuneSpace/skeleton/skeleton.Rmd

inst/rmarkdown/templates/ImmuneSpace/template.yaml

man/CreateConnection.Rd man/ISpalette.Rd man/ImmuneSpaceConnection.Rd man/ImmuneSpaceR-package.Rd man/check_netrc.Rd

man/figures/README-plot-1.png

man/figures/logo.png

man/interactive_netrc.Rd man/loadConnection.Rd man/template_IS.Rd man/theme_IS.Rd man/write_netrc.Rd

pkgdown/favicon/apple-touch-icon-120x120.png

pkgdown/favicon/apple-touch-icon-152x152.png

pkgdown/favicon/apple-touch-icon-180x180.png

pkgdown/favicon/apple-touch-icon-60x60.png

pkgdown/favicon/apple-touch-icon-76x76.png

pkgdown/favicon/apple-touch-icon.png

pkgdown/favicon/favicon-16x16.png

pkgdown/favicon/favicon-32x32.png

pkgdown/favicon/favicon.ico

tests/manualTests/manualTests.R tests/manualTests/pgrpTesting.R tests/testthat.R

tests/testthat/datasets/SDY180_fcs_control_files.rds

tests/testthat/datasets/SDY180_fcs_sample_files.rds

tests/testthat/datasets/SDY180_mbaa.rds

tests/testthat/datasets/SDY180_neut_ab_titer.rds

tests/testthat/datasets/SDY269_demographics.rds

tests/testthat/datasets/SDY269_elisa.rds

tests/testthat/datasets/SDY269_elispot.rds

tests/testthat/datasets/SDY269_fcs_analyzed_result.rds

tests/testthat/datasets/SDY269_gene_expression_files.rds

tests/testthat/datasets/SDY269_hai.rds

tests/testthat/datasets/SDY269_pcr.rds

tests/testthat/datasets/SDY28_hla_typing.rds

tests/testthat/helper-atStart.R tests/testthat/helper-getDataset.R tests/testthat/helper-getParticipantData.R tests/testthat/test-CreateConnection.R tests/testthat/test-cytometry.R tests/testthat/test-dataIntegration.R tests/testthat/test-downloadGEFiles.R tests/testthat/test-getDataset.R tests/testthat/test-getGEAnalysis.R tests/testthat/test-getGEInputs.R tests/testthat/test-getGEMatrix.R tests/testthat/test-getParticipantData.R tests/testthat/test-listDatasets.R tests/testthat/test-listGEAnalysis.R tests/testthat/test-listGEMatrices.R tests/testthat/test-localPath.R tests/testthat/test-plot.R vignettes/Intro_to_ImmuneSpaceR.Rmd vignettes/getDataset.Rmd vignettes/getGEMatrix.Rmd

vignettes/img/createNetrc.gif

vignettes/img/getDataset-views.png

vignettes/img/netrcOverwriteOption.gif

vignettes/interactiveNetrc.Rmd vignettes/report_SDY144.Rmd vignettes/report_SDY180.Rmd vignettes/report_SDY269.Rmd

RGLab/ImmuneSpaceR documentation built on Jan. 5, 2023, 10:24 a.m.