sca_alex: Create Alex data

In RGLab/MASTdata: This is the data used for the MAST paper

Description

Processed single cell RNA seqdata for our single cell RNA seq paper from Alex study.

Processed single cell RNA seqdata for our single cell RNA seq paper from Alex study.

Format

This is a SingleCellAssay object

• cDataCell level feature annotation.

• wellKey unique identifier

• Stim Stimulation

• Time Time

• BioRep Boolean for biological replicates

• TechRep Boolean for technical replicates

• OtherCondition Boolean for other conditions

• ngeneson percentage of genes that are turned on

• cngeneson centered ngeneson

fData

Gene level feature annotation.

• primerid gene symbols

• GENES gene symbols

exprs

Expression matrix

Details

This data set contains the processed data for our fake assay, with 100 replicated measurements for each of four subjects.

This data set contains the processed data for our fake assay, with 100 replicated measurements for each of four subjects.

Note

We used UCSC hg19 as the reference genome and used RSEM (bowtie) to align and calculate the count and the TPM matrix.

We used UCSC hg19 as the reference genome and used RSEM (bowtie) to align and calculate the count and the TPM matrix.

Author(s)

Jingyuan Deng, Masanao Yajima, Andrew McDavid, Greg Finak

Jingyuan Deng, Masanao Yajima, Andrew McDavid, Greg Finak

Source

The data was from Matin

The data was from Matin

RGLab/MASTdata documentation built on May 8, 2019, 5:52 a.m.