sca_alex: Create Alex data

Description Format Details Note Author(s) Source

Description

Processed single cell RNA seqdata for our single cell RNA seq paper from Alex study.

Processed single cell RNA seqdata for our single cell RNA seq paper from Alex study.

Format

This is a SingleCellAssay object

fData

Gene level feature annotation.

exprs

Expression matrix

Details

This data set contains the processed data for our fake assay, with 100 replicated measurements for each of four subjects.

This data set contains the processed data for our fake assay, with 100 replicated measurements for each of four subjects.

Note

We used UCSC hg19 as the reference genome and used RSEM (bowtie) to align and calculate the count and the TPM matrix.

We used UCSC hg19 as the reference genome and used RSEM (bowtie) to align and calculate the count and the TPM matrix.

Author(s)

Jingyuan Deng, Masanao Yajima, Andrew McDavid, Greg Finak

Jingyuan Deng, Masanao Yajima, Andrew McDavid, Greg Finak

Source

The data was from Matin

The data was from Matin


RGLab/MASTdata documentation built on May 9, 2017, 11:01 p.m.