In RGLab/cytoverse: Easily Install and Load the 'cytoverse'

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cytoverse

Overview

The cytoverse is a set of packages that are commonly used for cytometry data analysis. The cytoverse package is designed to make it easy to install and load core packages from the cytoverse in a single command. It also provides helper commands to check the versions of installed cytoverse packages.

Installation

# Install the cytoverse package
devtools::install_github("RGLab/cytoverse")
# Load the package
library(cytoverse)
# Install all cytoverse packages and their dependencies
cytoverse_update()

Usage

library(cytoverse) will load the core cytoverse packages (once they are installed):

• flowWorkspace, for gated data interaction.
• ggcyto, for data visualisation.
• openCyto, for auto gating.
• CytoML, for data analysis import/export through gatingML/xml.

library(cytoverse)

RGLab/cytoverse documentation built on July 17, 2020, 11:38 p.m.