Files in RMTbioinfo/ExCluster
ExCluster robustly detects differentially expressed exons between two conditions of RNA-seq data, requiring at least two independent biological replicates per condition
.BBSoptions
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/ExClust_compute_stats.R
R/ExClust_main_function.R
R/ExCluster.R
R/ExCluster_errors.R
R/GFF_convert.R
R/GRangesFromExClustResults.R
R/load_ExCluster_functions.R
R/plotExonlog2FC.R
R/processCounts.R
inst/NEWS
inst/extdata/iPSC_batch1_20_cond1_rep1.bam
inst/extdata/iPSC_batch1_20_cond1_rep2.bam
inst/extdata/iPSC_batch1_20_cond2_rep1.bam
inst/extdata/iPSC_batch1_20_cond2_rep2.bam
inst/extdata/normCounts.txt
inst/extdata/sub_ExClust_results.txt
inst/extdata/sub_gen.v23.ExClust.gff3
inst/extdata/sub_gen.v23.gtf
inst/script/toydata_bash_commands
man/ExCluster.Rd
man/GFF_convert.Rd
man/GRangesFromExClustResults.Rd
man/plotExonlog2FC.Rd
man/processCounts.Rd
vignettes/ExCluster.Rnw
