mRNA.20160128: mRNA datasets from TCGA project from 2016-01-28 release date

In RTCGA/RTCGA.mRNA.20160128: Clinical datasets from The Cancer Genome Atlas Project from 2016-01-28

Description

Package provides mRNA datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Data were downloaded using RTCGA-package and contain snapshots for the release date: 2016-01-28 . Visit RTCGA site: http://rtcga.github.io/RTCGA/. Use cases, examples and information about datasets in RTCGA.mRNA.20160128 can be found here: browseVignettes("RTCGA"). Link to the data format explanation is in the package DESCRIPTION file.

Usage

BRCA.mRNA.20160128

COADREAD.mRNA.20160128

GBMLGG.mRNA.20160128

GBM.mRNA.20160128

KIPAN.mRNA.20160128

KIRC.mRNA.20160128

KIRP.mRNA.20160128

LUAD.mRNA.20160128

LUSC.mRNA.20160128

OV.mRNA.20160128

UCEC.mRNA.20160128

Arguments

metadata

A logical indicating whether load data into the workspace (default, FALSE) or to only display the object's metadata (TRUE). See examples.

Details

browseVignettes("RTCGA")

Value

• BRCA.mRNA.20160128 - class: data.frame - nrow: 590 - ncol: 17815

• COADREAD.mRNA.20160128 - class: data.frame - nrow: 244 - ncol: 17815

• GBMLGG.mRNA.20160128 - class: data.frame - nrow: 27 - ncol: 17815

• GBM.mRNA.20160128 - class: data.frame - nrow: 27 - ncol: 17815

• KIPAN.mRNA.20160128 - class: data.frame - nrow: 88 - ncol: 17815

• KIRC.mRNA.20160128 - class: data.frame - nrow: 72 - ncol: 17815

• KIRP.mRNA.20160128 - class: data.frame - nrow: 16 - ncol: 17815

• LUAD.mRNA.20160128 - class: data.frame - nrow: 32 - ncol: 17815

• LUSC.mRNA.20160128 - class: data.frame - nrow: 154 - ncol: 17815

• OV.mRNA.20160128 - class: data.frame - nrow: 561 - ncol: 17815

• UCEC.mRNA.20160128 - class: data.frame - nrow: 54 - ncol: 17815

Source

http://gdac.broadinstitute.org/

Examples

## Not run: 
 BRCA.mRNA.20160128(metadata = TRUE) 
 BRCA.mRNA.20160128(metadata = FALSE) 
 BRCA.mRNA.20160128 

## End(Not run)

RTCGA/RTCGA.mRNA.20160128 documentation built on May 8, 2019, 7:35 a.m.