methylation.20160128: methylation datasets from TCGA project from 2016-01-28...

In RTCGA/RTCGA.methylation.20160128: Methylation datasets from The Cancer Genome Atlas Project from 2016-01-28

Description

Package provides methylation datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Data were downloaded using RTCGA-package and contain snapshots for the release date: 2016-01-28 . Visit RTCGA site: http://rtcga.github.io/RTCGA/. Use cases, examples and information about datasets in RTCGA.methylation.20160128 can be found here: browseVignettes("RTCGA"). Link to the data format explanation is in the package DESCRIPTION file.

Usage

BRCA.methylation.20160128

COADREAD.methylation.20160128

GBMLGG.methylation.20160128

KIPAN.methylation.20160128

KIRC.methylation.20160128

KIRP.methylation.20160128

LAML.methylation.20160128

LGG.methylation.20160128

LUAD.methylation.20160128

LUSC.methylation.20160128

OV.methylation1.20160128

OV.methylation2.20160128

STAD.methylation.20160128

STES.methylation.20160128

UCEC.methylation.20160128

Arguments

metadata

A logical indicating whether load data into the workspace (default, FALSE) or to only display the object's metadata (TRUE). See examples.

Details

browseVignettes("RTCGA")

Source

http://gdac.broadinstitute.org/

Examples

## Not run: 
 BRCA.methylation.20160128(metadata = TRUE) 
 BRCA.methylation.20160128(metadata = FALSE) 
 BRCA.methylation.20160128 

## End(Not run)

RTCGA/RTCGA.methylation.20160128 documentation built on May 8, 2019, 7:35 a.m.