Description Usage Details Value Source
Package provides mutations datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/.
Data were downloaded using RTCGA-package and contain snapshots for the date: 2015-11-01
. The process is described here: http://rtcga.github.io/RTCGA/.
Use cases, examples and information about datasets in RTCGA.data family can be found here: browseVignettes("RTCGA")
Mutations data format is explained here https://wiki.nci.nih.gov/display/TCGA/Mutation+Annotation+Format+(MAF)+Specification. There is extra one column with patients' barcodes.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 | ACC.mutations
BLCA.mutations
BRCA.mutations
CESC.mutations
CHOL.mutations
COAD.mutations
COADREAD.mutations
DLBC.mutations
ESCA.mutations
GBMLGG.mutations
GBM.mutations
HNSC.mutations
KICH.mutations
KIPAN.mutations
KIRC.mutations
KIRP.mutations
LAML.mutations
LGG.mutations
LIHC.mutations
LUAD.mutations
LUSC.mutations
OV.mutations
PAAD.mutations
PCPG.mutations
PRAD.mutations
READ.mutations
SKCM.mutations
STAD.mutations
STES.mutations
SARC.mutations
TGCT.mutations
THCA.mutations
UCEC.mutations
UCS.mutations
UVM.mutations
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browseVignettes("RTCGA")
Data frames with mutations data.
http://gdac.broadinstitute.org/
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