rnaseq: rnaseq datasets from TCGA project

Description Usage Details Value Source

Description

rnaseq data format is explained here https://wiki.nci.nih.gov/display/TCGA/RNASeq+Version+2. Package provides rnaseq datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Data were downloaded using RTCGA-package and contain snapshots for the date: 2015-11-01. The process is described here: http://rtcga.github.io/RTCGA/. Use cases, examples and information about datasets in RTCGA family can be found here: browseVignettes("RTCGA"). Data source is illumina hiseq Level 3 RSEM normalized expression data. Converting RTCGA.rnaseq datasets from data.frames to Bioconductor classes is explained here convertTCGA.

Usage

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Details

browseVignettes("RTCGA")

Value

Data frames with rnaseq data.

Source

http://gdac.broadinstitute.org/


RTCGA/RTCGA.rnaseq documentation built on May 8, 2019, 8:01 a.m.