rnaseq: rnaseq datasets from TCGA project
In RTCGA/RTCGA.rnaseq: Rna-seq datasets from The Cancer Genome Atlas Project
Description
Usage
Details
Value
Source
Description
rnaseq data
format is explained here https://wiki.nci.nih.gov/display/TCGA/RNASeq+Version+2. Package provides rnaseq datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/.
Data were downloaded using RTCGA-package and contain snapshots for the date: 2015-11-01. The process is described here: http://rtcga.github.io/RTCGA/.
Use cases, examples and information about datasets in RTCGA family can be found here: browseVignettes("RTCGA"). Data source is illumina hiseq Level 3 RSEM normalized expression data. Converting RTCGA.rnaseq datasets from data.frames to Bioconductor classes is explained here convertTCGA.
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ACC.rnaseq
BLCA.rnaseq
BRCA.rnaseq
CESC.rnaseq
CHOL.rnaseq
COAD.rnaseq
COADREAD.rnaseq
DLBC.rnaseq
ESCA.rnaseq
GBM.rnaseq
GBMLGG.rnaseq
HNSC.rnaseq
KICH.rnaseq
KIPAN.rnaseq
KIRC.rnaseq
KIRP.rnaseq
LAML.rnaseq
LGG.rnaseq
LIHC.rnaseq
LUAD.rnaseq
LUSC.rnaseq
OV.rnaseq
PAAD.rnaseq
PCPG.rnaseq
PRAD.rnaseq
READ.rnaseq
SARC.rnaseq
SKCM.rnaseq
STAD.rnaseq
STES.rnaseq
TGCT.rnaseq
THCA.rnaseq
THYM.rnaseq
UCEC.rnaseq
UCS.rnaseq
UVM.rnaseq
Details
browseVignettes("RTCGA")
Value
Data frames with rnaseq data.
Source
http://gdac.broadinstitute.org/
RTCGA/RTCGA.rnaseq documentation built on May 8, 2019, 8:01 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Details Value Source
Description
rnaseq data
format is explained here https://wiki.nci.nih.gov/display/TCGA/RNASeq+Version+2. Package provides rnaseq datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/.
Data were downloaded using RTCGA-package and contain snapshots for the date: 2015-11-01. The process is described here: http://rtcga.github.io/RTCGA/.
Use cases, examples and information about datasets in RTCGA family can be found here: browseVignettes("RTCGA"). Data source is illumina hiseq Level 3 RSEM normalized expression data. Converting RTCGA.rnaseq datasets from data.frames to Bioconductor classes is explained here convertTCGA.
Usage
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 | ACC.rnaseq
BLCA.rnaseq
BRCA.rnaseq
CESC.rnaseq
CHOL.rnaseq
COAD.rnaseq
COADREAD.rnaseq
DLBC.rnaseq
ESCA.rnaseq
GBM.rnaseq
GBMLGG.rnaseq
HNSC.rnaseq
KICH.rnaseq
KIPAN.rnaseq
KIRC.rnaseq
KIRP.rnaseq
LAML.rnaseq
LGG.rnaseq
LIHC.rnaseq
LUAD.rnaseq
LUSC.rnaseq
OV.rnaseq
PAAD.rnaseq
PCPG.rnaseq
PRAD.rnaseq
READ.rnaseq
SARC.rnaseq
SKCM.rnaseq
STAD.rnaseq
STES.rnaseq
TGCT.rnaseq
THCA.rnaseq
THYM.rnaseq
UCEC.rnaseq
UCS.rnaseq
UVM.rnaseq
|
Details
browseVignettes("RTCGA")
Value
Data frames with rnaseq data.
Source
http://gdac.broadinstitute.org/
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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