Man pages for RachellyN/FIT_mouse2man
Predicts human disease relevant genes from mouse model gene expression, based on prior mouse and human gene expression comparisons
| AllData_V2.0 | All the training data FIT is based on |
| best_models | A list of the best predictive model for FIT's perforemance... |
| CheckFile | Check input file |
| CheckFormat | Check input file format |
| ComputePredictions | Compute FIT predictions |
| FIT | Run FIT pipeline |
| HS_MM_Symbol_Entrez | A data.frame containing the Entrez IDs of human and mouse... |
| microarray_sample | Microarray sample data |
| MM_Entrez_symbol_desc | A data.frame containing the symbols of human and mouse... |
| pca_rotations | The rotations needed to convert a vector of fold-changes to a... |
| PreProcess | Pre-processing of mouse data for predictions by FIT |
| Psoriasis_classifier_neg | Microarray sample data to run in the function RunClassifier -... |
| RNAseq_sample | RNAseq sample data |
| RunClassifier | Run FIT improvement prediction classifier |
| ShowClassifierPerformance | ShowClassifierPerformance |
| slopes_per_gene_V2.0 | The slopes derived from the linear regression FIT computed... |
| StaphInfection_classifier_pos | Microarray sample data to run in the function RunClassifier -... |
