CheckFormat: Check input file format
In RachellyN/FIT_mouse2man: Predicts human disease relevant genes from mouse model gene expression, based on prior mouse and human gene expression comparisons
Description
This function validates the format of the input mouse gene expression file is correct for process by FIT.
It will output an error message int he following cases:
(a) Less than 80
(b) Sample names don't start with "c_" or "d_" (for microarray daat only)
(c) There are at least 3 disease samples and 3 control samples (for microarray daat only)
(d) The data i snot log-transformed (the range of values are either <0 or >100) (for microarray daat only)
Usage
1
CheckFormat(MouseData, DataType)
Arguments
MouseData
The mouse data, in CSV format
DataType
'microarray' or 'rnaseq'
RachellyN/FIT_mouse2man documentation built on May 16, 2019, 6:59 p.m.
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Description
This function validates the format of the input mouse gene expression file is correct for process by FIT. It will output an error message int he following cases: (a) Less than 80 (b) Sample names don't start with "c_" or "d_" (for microarray daat only) (c) There are at least 3 disease samples and 3 control samples (for microarray daat only) (d) The data i snot log-transformed (the range of values are either <0 or >100) (for microarray daat only)
Usage
1 | CheckFormat(MouseData, DataType)
|
Arguments
MouseData |
The mouse data, in CSV format |
DataType |
'microarray' or 'rnaseq' |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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