merge_graphs: Merge graphs

In RajLabMSSM/echodeps: echoverse module: Create package dependency graphs

Merge graphs

Description

Merge a list of graphs into a single graph. Can take in a list of igraphs or a list of igraphs, and can return a merged tbl_graph or a merged igraph.

Usage

merge_graphs(
  graph_list,
  node_size,
  output = c("tidygraph", "igraph"),
  by = "ref",
  verbose = TRUE
)

Arguments

graph_list	A list of graphs.
node_size	Strategy for setting node sizes. Can be one of: NULL : Sets the target package node's size to 40 and the rest to 30. <numeric> : User-provided node size. Sets all nodes to the same size. <character> : User-provided metadata column name. Scales node size to a vector of numeric values in the node metadata.
output	Output format to return the graph in.
by	A join specification created with join_by(), or a character vector of variables to join by. If NULL, the default, ⁠*_join()⁠ will perform a natural join, using all variables in common across x and y. A message lists the variables so that you can check they're correct; suppress the message by supplying by explicitly. To join on different variables between x and y, use a join_by() specification. For example, join_by(a == b) will match x$a to y$b. To join by multiple variables, use a join_by() specification with multiple expressions. For example, join_by(a == b, c == d) will match x$a to y$b and x$c to y$d. If the column names are the same between x and y, you can shorten this by listing only the variable names, like join_by(a, c). join_by() can also be used to perform inequality, rolling, and overlap joins. See the documentation at ?join_by for details on these types of joins. For simple equality joins, you can alternatively specify a character vector of variable names to join by. For example, by = c("a", "b") joins x$a to y$a and x$b to y$b. If variable names differ between x and y, use a named character vector like by = c("x_a" = "y_a", "x_b" = "y_b"). To perform a cross-join, generating all combinations of x and y, see cross_join().
verbose	Print messages.

Value

Merge tbl_graph or igraph.

Examples

set.seed(2023)
graph_list <- example_graphs()
g <- merge_graphs(graph_list)
plot(g, edge.label=igraph::E(g)$color)

RajLabMSSM/echodeps documentation built on Oct. 31, 2023, 7:20 a.m.