Man pages for RajLabMSSM/echolocatoR
Automated genomic fine-mapping
| arg_list_handler | Argument list handler |
| arg_types | Argument types |
| batapply | 'echolocatoR'-themed progress bar |
| catalogueR | catalogueR |
| check_deprecated | Check deprecated arguments |
| check_genome | Check genome build |
| check_required | Check required arguments |
| check_topSNPs | Check 'topSNPs' |
| construct_locus_dir | Make locus-specific results folder |
| construct_subset_path | Construct the path of the locus subset |
| deprecated | deprecated |
| downloadR | downloadR |
| echoannot | echoannot |
| echoconda | echoconda |
| echodata | echodata |
| echolocatoR-package | echolocatoR: Automated genomic fine-mapping |
| extract_SNP_subset | Extract a subset of the summary stats |
| finemap_loci | Fine-map multiple loci |
| finemap_locus | Run 'echolocatoR' pipeline on a single locus |
| get_locus_dir | Extract the locus dir |
| get_study_dir | Extract the study dir |
| lfm | lfm |
| message_parallel | Send messages to console even from within parallel processes |
| pvalues_to_symbols | P-values to symbols |
| query_handler | Query handler |
| snps_to_condition | Identify SNPs to condition on |
| startup | Startup messages |
