Files in RajLabMSSM/echolocatoR
Automated genomic fine-mapping
.Rbuildignore
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/workflows/rworkflows.yml
.gitignore
.gitmodules
DESCRIPTION
NAMESPACE
NEWS.md
R/.DS_Store
R/arg_list_handler.R
R/arg_types.R
R/bat_icon.R
R/batapply.R
R/check_deprecated.R
R/check_genome.R
R/check_required.R
R/check_topSNPs.R
R/construct_locus_dir.R
R/construct_subset_path.R
R/echolocatoR-package.R
R/extract_snp_subset.R
R/finemap_loci.R
R/finemap_locus.R
R/get_dataset_name.R
R/get_locus_dir.R
R/get_study_dir.R
R/imports.R
R/message_parallel.R
R/messager.R
R/package.R
R/postprocess_data.R
R/pvalues_to_symbols.R
R/query_handler.R
R/report_time.R
R/set_tryCatch.R
R/snps_to_condition.R
R/startup.R
R/steps.R
R/zzz.R
README.Rmd
README.md
R_tmp/.DS_Store
R_tmp/COLOC.R
R_tmp/CellLineOntology.R
R_tmp/Circos.R
R_tmp/DeepSEA.R
R_tmp/Dey_DeepLearning.R
R_tmp/GARFIELD.R
R_tmp/GoShifter.R
R_tmp/IMPACT.R
R_tmp/MARGE.R
R_tmp/OpenTargets.R
R_tmp/PICS.R
R_tmp/POLYFUN_h2_enrichment.R
R_tmp/POLYFUN_h2_enrichment_SNPgroups.R
R_tmp/POLYFUN_h2_enrichment_SNPgroups_plot.R
R_tmp/QTL_boxplots.R
R_tmp/SNP_distributions.R
R_tmp/SURE.R
R_tmp/SpliceAI.R
R_tmp/coloc_summary.R
R_tmp/cpvSNP.R
R_tmp/directory.R
R_tmp/dt_replace.R
R_tmp/fGWAS.R
R_tmp/mergeQTL.R
R_tmp/merge_coloc_results.R
R_tmp/merge_coloc_results_each.R
R_tmp/psychENCODE.R
R_tmp/replication.R
R_tmp/validation.R
echolocatoR.Rproj
images/echolocatoR_Fig1.png
images/echolocatoR_logo2.png
images/echoverse.png
images/sinai.png
images/super_plot.png
inst/.DS_Store
inst/CITATION
inst/echolocatoR_2.0.2.pdf
inst/extdata/ascii_batty.txt
inst/hex/.DS_Store
inst/hex/hex.png
inst/hex/hexSticker.Rmd
man/.Rapp.history
man/arg_list_handler.Rd
man/arg_types.Rd
man/batapply.Rd
man/catalogueR.Rd
man/check_deprecated.Rd
man/check_genome.Rd
man/check_required.Rd
man/check_topSNPs.Rd
man/construct_locus_dir.Rd
man/construct_subset_path.Rd
man/deprecated.Rd
man/downloadR.Rd
man/echoannot.Rd
man/echoconda.Rd
man/echodata.Rd
man/echolocatoR-package.Rd
man/extract_SNP_subset.Rd
man/finemap_loci.Rd
man/finemap_locus.Rd
man/get_locus_dir.Rd
man/get_study_dir.Rd
man/lfm.Rd
man/message_parallel.Rd
man/pvalues_to_symbols.Rd
man/query_handler.Rd
man/snps_to_condition.Rd
man/startup.Rd
tests/testthat.R
tests/testthat/Rplots.pdf
tests/testthat/test-check_deprecated.R
tests/testthat/test-check_genome.R
tests/testthat/test-check_required.R
tests/testthat/test-check_topSNPs.R
tests/testthat/test-extract_snp_subset.R
tests/testthat/test-finemap_loci.R
tests/testthat/test-finemap_locus.R
tests/testthat/test-query_handler.R
vignettes/.DS_Store
vignettes/.gitignore
vignettes/QTLs.Rmd
vignettes/docker.Rmd
vignettes/echolocatoR.Rmd
vignettes/summarise.Rmd
