ROADMAP_track_plot: Plot ROADMAP query

In RajLabMSSM/echoplot: echoverse module: Locus plot creation for fine-mapping and colocalization studies

Plot ROADMAP query

Description

Plot ROADMAP query

Usage

ROADMAP_track_plot(
  grl.roadmap,
  gr.snp = NULL,
  geom = "density",
  adjust = 0.2,
  position = c("stack", "fill", "dodge"),
  show_plot = TRUE,
  as_ggplot = TRUE,
  verbose = TRUE
)

Arguments

grl.roadmap	ROADMAP query results.
gr.snp	Optionally, can include an extra GRanges object to ensure the plot does not extend beyond certain coordinates.
geom	The type of plot to create. Options include "density" and "histogram".
adjust	The granularity of the peaks.
show_plot	Whether to print the plot.

Source

gr.snp <- echodata::dt_to_granges(echodata::BST1) grl.roadmap <- echoannot::ROADMAP_query( query_dat = gr.snp, merge_and_process = TRUE, keyword_query = "monocyte") track.roadmap <- ROADMAP_track_plot(grl.roadmap, gr.snp = gr.snp)

RajLabMSSM/echoplot documentation built on Oct. 24, 2023, 2:41 a.m.