Description Usage Format Source
The rowRanges data of the KallistoExperiment holds a GRanges object with metacolumns used in annotations as follows:
1 |
A GRanges object for unannotated transcripts with 9 metadata columns
seqnames: names of transcripts
ranges: coordinates if known
strand: strand info
tx_length: transcript length not effective length
gc_content: content of GC bases
tx_id: transcript id, or repeat name
gene_id: ENSEMBL gene id or repeat name
gene_name: HUGO gene name from entrez conversion
entrez_id: entrez id
tx_biotype: transcript biotype
gene_biotype: gene biotype
biotype_class: biotype class
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