asTDF: Dump DNA methylation values, gene-level counts, or whatever...
In RamsinghLab/ozymandias: Tools for region- and process-centric analyses of multiple assay types
Description
Usage
Arguments
Value
Description
Dump DNA methylation values, gene-level counts, or whatever for IGV viewing
Usage
1
Arguments
x
a SummarizedExperiment-like object of some sort
assay
the name of the assay to dump (default: assays(x)[[1]])
group
a grouping factor to dump by (default: dump everyone)
stub
the filename stub to dump (default: name of x, or x_group)
genome
the genome to use (default is hg19, due to annotations)
Value
list a list of filenames dumped
RamsinghLab/ozymandias documentation built on May 9, 2019, 9:21 a.m.
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Description Usage Arguments Value
Description
Dump DNA methylation values, gene-level counts, or whatever for IGV viewing
Usage
1 |
Arguments
x |
a SummarizedExperiment-like object of some sort |
assay |
the name of the assay to dump (default: assays(x)[[1]]) |
group |
a grouping factor to dump by (default: dump everyone) |
stub |
the filename stub to dump (default: name of x, or x_group) |
genome |
the genome to use (default is hg19, due to annotations) |
Value
list a list of filenames dumped
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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