asTDF: Dump DNA methylation values, gene-level counts, or whatever...

Description Usage Arguments Value

Description

Dump DNA methylation values, gene-level counts, or whatever for IGV viewing

Usage

1
asTDF(x, assay = 1, group = NULL, stub = NULL, genome = "hg19")

Arguments

x

a SummarizedExperiment-like object of some sort

assay

the name of the assay to dump (default: assays(x)[[1]])

group

a grouping factor to dump by (default: dump everyone)

stub

the filename stub to dump (default: name of x, or x_group)

genome

the genome to use (default is hg19, due to annotations)

Value

list a list of filenames dumped


RamsinghLab/ozymandias documentation built on May 9, 2019, 9:21 a.m.