coRegnet-package: coRegnet : inference and interrogation co-regulation networks

In RemyNicolle/CoRegNet: CoRegNet : reconstruction and integrated analysis of co-regulatory networks

Description

coRegnet can be used to infer and analyse regulatory networks. Although it can be used with any network, it has it's own regulatory network inference routine based on a hybrid version of LICORN which combines both a discrete and a statistical model to infer regulatory network with an emphasis on regulator cooperativity.

Author(s)

Remy Nicolle <remy.c.nicolle AT gmail.com>

References

Chebil I, Nicolle R, Santini G, Rouveirol C & Elati M (2014) Hybrid Method Inference for the Construction of Cooperative Regulatory Network in Human. IEEE Trans Nanobioscience

Nicolle R, Elati M and Radvanyi F (2012) Network Transformation of Gene Expression for Feature Extraction. In pp 108-113.

Elati M, Neuvial P, Bolotin-Fukuhara M, Barillot E, Radvanyi F and Rouveirol C (2007) LICORN: learning cooperative regulation networks from gene expression data. Bioinformatics 23: 2407-2414

RemyNicolle/CoRegNet documentation built on Aug. 2, 2021, 9:49 a.m.