inst/old/TODO.md

In RichardJActon/MutantSets: What the Package Does (One Line, Title Case)

Notes -----------------------------------------------------------------------

Top priority

• [ ] dockerise
• [ ] User Documentation
• [x] deletion filtering - BUG

Additional

• [ ] click on plot selects variant
• [ ] other plot selections filter variants
• [ ] description of filtering citeria/process (code? ~ shinymeta)
• [ ] set membership plot - which sets
• [ ] show full gt table in Tab box
• [ ] Download button deletion/multivar
• [ ] Column name selection formatter handling to prevent errors on deselection of pre-selected columns
• [ ] keys??

Partial implementation needs follow-up

• [x] complete function documentation
• [x] automated testing of functions
• [x] extended Quality filtering options
• [x] multi variant loci handling
• [ ] wormbase links? ~ tricky due to mixed transcript/gene names, could do for just tscrpt nms sep col embed instead

Completed

• [x] dropdown button selectize chrs?
• [x] embedded wormbase viewer for selected variants
• [x] name samples - display bug on null
• [x] mutation types proportion
• [x] packageise
• [x] pick columns to show (use $meta)
• [x] colour types in table - match plot
• [x] Download button main variant table

RichardJActon/MutantSets documentation built on Feb. 27, 2025, 3:13 a.m.