revdep/problems.md
In Robertus100/tibble: Simple Data Frames
Setup
Platform
|setting |value |
|:--------|:----------------------------|
|version |R version 3.3.3 (2017-03-06) |
|system |x86_64, linux-gnu |
|ui |X11 |
|language |(EN) |
|collate |en_US.UTF-8 |
|tz |Zulu |
|date |2017-03-31 |
Packages
|package |* |version |date |source |
|:--------------|:--|:----------|:----------|:--------------------------------|
|dplyr | |0.5.0 |2016-06-24 |CRAN (R 3.3.2) |
|knitr | |1.15.1 |2016-11-22 |cran (@1.15.1) |
|lazyeval | |0.2.0 |2016-06-12 |cran (@0.2.0) |
|microbenchmark | |1.4-2.1 |2015-11-25 |cran (@1.4-2.1) |
|nycflights13 | |0.2.2 |2017-01-27 |cran (@0.2.2) |
|Rcpp | |0.12.10 |2017-03-31 |Github (RcppCore/Rcpp@886f5df) |
|rmarkdown | |1.4 |2017-03-24 |cran (@1.4) |
|testthat | |1.0.2.9000 |2017-02-27 |Github (hadley/testthat@b72a228) |
|tibble | |1.2 |2016-08-26 |cran (@1.2) |
|withr | |1.0.2 |2016-06-20 |CRAN (R 3.3.1) |
Check results
10 packages with problems
|package |version | errors| warnings| notes|
|:-------------|:-------|------:|--------:|-----:|
|dat |0.1.0 | 1| 0| 0|
|flextable |0.1.0 | 0| 1| 0|
|FSelectorRcpp |0.1.2 | 1| 0| 2|
|ggimage |0.0.4 | 1| 0| 0|
|haven |1.0.0 | 2| 0| 1|
|hddtools |0.6 | 1| 0| 0|
|heemod |0.8.0 | 1| 1| 1|
|highcharter |0.5.0 | 0| 1| 1|
|officer |0.1.1 | 2| 1| 0|
|plotly |4.5.6 | 1| 0| 0|
dat (0.1.0)
Maintainer: Sebastian Warnholz wahani@gmail.com
Bug reports: https://github.com/wahani/dat/issues
1 error | 0 warnings | 0 notes
checking tests ... ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
^
tests/testthat/test-trunc-mat.R:5:3: style: Variable and function names should not be longer than 25 characters.
print_arg_names_without_ellipsis <- setdiff(print_arg_names, "...")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tests/testthat/test-trunc-mat.R:9:16: style: Variable and function names should not be longer than 25 characters.
expect_equal(print_arg_names_without_ellipsis, trunc_mat_arg_names)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
testthat results ================================================================
OK: 107 SKIPPED: 0 FAILED: 1
1. Failure: Package Style (@test-lintr.R#5)
Error: testthat unit tests failed
Execution halted
flextable (0.1.0)
Maintainer: David Gohel david.gohel@ardata.fr
0 errors | 1 warning | 0 notes
checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: officer
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
Quitting from lines 39-41 (format.Rmd)
Error: processing vignette 'format.Rmd' failed with diagnostics:
cannot open the connection
Execution halted
FSelectorRcpp (0.1.2)
Maintainer: Zygmunt Zawadzki zygmunt@zstat.pl
Bug reports: https://github.com/mi2-warsaw/FSelectorRcpp/issues
1 error | 0 warnings | 2 notes
checking examples ... ERROR
Running examples in ‘FSelectorRcpp-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: feature_search
> ### Title: General Feature Searching Engine
> ### Aliases: feature_search
>
> ### ** Examples
>
>
> # Enable parallelization in examples
> library(doSNOW) # doSNOW has an option for progress bar
Loading required package: foreach
Loading required package: iterators
Loading required package: snow
> cl <- makeCluster(2)
Loading required namespace: Rmpi
Error in Rmpi::mpi.comm.spawn(slave = mpitask, slavearg = args, nslaves = count, :
MPI_Comm_spawn is not supported.
Calls: makeCluster -> makeMPIcluster -> <Anonymous>
Execution halted
checking package dependencies ... NOTE
Package suggested but not available for checking: ‘RTCGA.rnaseq’
checking installed package size ... NOTE
installed size is 9.7Mb
sub-directories of 1Mb or more:
doc 2.2Mb
libs 7.3Mb
ggimage (0.0.4)
Maintainer: Guangchuang Yu guangchuangyu@gmail.com
Bug reports: https://github.com/GuangchuangYu/ggimage/issues
1 error | 0 warnings | 0 notes
checking package dependencies ... ERROR
Packages required but not available: ‘EBImage’ ‘gridGraphics’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
haven (1.0.0)
Maintainer: Hadley Wickham hadley@rstudio.com
Bug reports: https://github.com/hadley/haven/issues
2 errors | 0 warnings | 1 note
checking examples ... ERROR
Running examples in ‘haven-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: read_dta
> ### Title: Read and write Stata DTA files.
> ### Aliases: read_dta read_stata write_dta
>
> ### ** Examples
... 14 lines ...
8 5.0 3.4 1.5 0.2 setosa
9 4.4 2.9 1.4 0.2 setosa
10 4.9 3.1 1.5 0.1 setosa
# ... with 140 more rows
>
> tmp <- tempfile(fileext = ".dta")
> write_dta(mtcars, tmp)
Error in write_dta_(data, normalizePath(path, mustWork = FALSE), version = stata_file_format(version)) :
Writing failure: Unable to write data.
Calls: write_dta -> write_dta_ -> .Call
Execution halted
checking tests ... ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
testthat results ================================================================
OK: 132 SKIPPED: 0 FAILED: 9
1. Error: can roundtrip basic types (@test-write-dta.R#5)
2. Error: can roundtrip missing values (as much as possible) (@test-write-dta.R#12)
3. Error: can roundtrip date times (@test-write-dta.R#23)
4. Error: infinity gets converted to NA (@test-write-dta.R#28)
5. Error: factors become labelleds (@test-write-dta.R#33)
6. Error: labels are preserved (@test-write-dta.R#44)
7. Error: labelleds are round tripped (@test-write-dta.R#52)
8. Error: factors become labelleds (@test-write-dta.R#59)
9. Error: labels are converted to utf-8 (@test-write-dta.R#73)
Error: testthat unit tests failed
Execution halted
checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
hddtools (0.6)
Maintainer: Claudia Vitolo cvitolodev@gmail.com
Bug reports: https://github.com/ropensci/hddtools/issues
1 error | 0 warnings | 0 notes
checking tests ... ERROR
Running ‘testthat.R’ [14s/22s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
3: stop(gettextf("unable to find an inherited method for function %s for signature %s",
sQuote(fdef@generic), sQuote(cnames)), domain = NA)
trying URL 'ftp://ftp.bafg.de/pub/REFERATE/GRDC/ltdata/africa.zip'
ftp data connection made, file length 2730333 bytes
==================================================
downloaded 2.6 MB
testthat results ================================================================
OK: 55 SKIPPED: 1 FAILED: 2
1. Error: Test TRMM function using dates in the past (@test-TRMM.R#15)
2. Error: Test TRMM function using 3-hourly dates in the past (@test-TRMM.R#58)
Error: testthat unit tests failed
Execution halted
heemod (0.8.0)
Maintainer: Antoine Filipovic-Pierucci pierucci@gmail.com
Bug reports: https://github.com/pierucci/heemod/issues
1 error | 1 warning | 1 note
checking tests ... ERROR
Running ‘testthat.R’ [33s/36s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
5: as.data.frame(flexsurv::summary.flexsurvreg(x, t = times_surv, type = "cumhaz"))
6: flexsurv::summary.flexsurvreg
7: getExportedValue(pkg, name)
8: stop(gettextf("'%s' is not an exported object from 'namespace:%s'", name, getNamespaceName(ns)),
call. = FALSE, domain = NA)
.model from to prob
1 standard RevisionTHR SuccessfulRevision <NA>
2 new RevisionTHR SuccessfulRevision <NA>
testthat results ================================================================
OK: 346 SKIPPED: 0 FAILED: 1
1. Error: (unknown) (@test_survival.R#23)
Error: testthat unit tests failed
Execution halted
checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
...
'colour', which will replace the existing scale.
Scale for 'colour' is already present. Adding another scale for
'colour', which will replace the existing scale.
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
... 8 lines ...
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Error in mutate_impl(.data, dots) :
'summary.flexsurvreg' is not an exported object from 'namespace:flexsurv'
Quitting from lines 42-83 (j-survival.Rmd)
Error: processing vignette 'j-survival.Rmd' failed with diagnostics:
Error in parameter: p2.
Execution halted
checking dependencies in R code ... NOTE
Missing or unexported object: ‘flexsurv::summary.flexsurvreg’
highcharter (0.5.0)
Maintainer: Joshua Kunst jbkunst@gmail.com
Bug reports: https://github.com/jbkunst/highcharter/issues
0 errors | 1 warning | 1 note
checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Highcharts (www.highcharts.com) is a Highsoft software product which is
not free for commercial and Governmental use
Quitting from lines 45-46 (charting-data-frames.Rmd)
Error: processing vignette 'charting-data-frames.Rmd' failed with diagnostics:
cannot open the connection
Execution halted
checking installed package size ... NOTE
installed size is 16.5Mb
sub-directories of 1Mb or more:
doc 13.7Mb
htmlwidgets 1.9Mb
officer (0.1.1)
Maintainer: David Gohel david.gohel@ardata.fr
Bug reports: https://github.com/davidgohel/officer/issues
2 errors | 1 warning | 0 notes
checking examples ... ERROR
Running examples in ‘officer-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: slip_in_img
> ### Title: append an image
> ### Aliases: slip_in_img
>
> ### ** Examples
>
> library(magrittr)
> img.file <- file.path( Sys.getenv("R_HOME"), "doc", "html", "logo.jpg" )
> x <- read_docx() %>%
+ body_add_par("R logo: ", style = "Normal") %>%
+ slip_in_img(src = img.file, style = "strong", width = .3, height = .3)
Error: file.exists(src) is not TRUE
Execution halted
checking tests ... ERROR
Running ‘testthat.R’ [21s/21s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
9: ph_with_img(., type = "body", src = img.file, height = 1.06, width = 1.39)
10: external_img(src, width = width, height = height)
11: stopifnot(file.exists(src))
12: stop(sprintf(ngettext(length(r), "%s is not TRUE", "%s are not all TRUE"), ch), call. = FALSE,
domain = NA)
testthat results ================================================================
OK: 317 SKIPPED: 0 FAILED: 4
1. Error: image add (@test-docx-add.R#68)
2. Error: pml fp_border (@test-fp_cell.R#75)
3. Error: css fp_border (@test-fp_cell.R#165)
4. Error: add img into placeholder (@test-pptx-add.R#67)
Error: testthat unit tests failed
Execution halted
checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 181-191 (powerpoint.Rmd)
Error: processing vignette 'powerpoint.Rmd' failed with diagnostics:
file.exists(src) is not TRUE
Execution halted
plotly (4.5.6)
Maintainer: Carson Sievert cpsievert1@gmail.com
Bug reports: https://github.com/ropensci/plotly/issues
1 error | 0 warnings | 0 notes
checking tests ... ERROR
Running ‘testthat.R’ [44s/44s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
[1] "Running test: plotly-group-within-trace"
[1] "Running test: plotly-alpha-blending"
[1] "Running test: plotly-alpha-no-color"
[1] "Running test: plotly-factor-axis"
[1] "Running test: plotly-character-axis"
[1] "Running test: plotly-histogram"
[1] "Running test: plotly-histogram-vert"
[1] "Running test: plotly-inherit-FALSE"
[1] "Running test: plotly-time-series-summary"
testthat results ================================================================
OK: 813 SKIPPED: 17 FAILED: 1
1. Error: datetimes are converted to e.g. 2013-01-02 05:00:00 (@test-ggplot-date.R#11)
Error: testthat unit tests failed
Execution halted
Robertus100/tibble documentation built on May 9, 2019, 10:09 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Setup
Platform
|setting |value | |:--------|:----------------------------| |version |R version 3.3.3 (2017-03-06) | |system |x86_64, linux-gnu | |ui |X11 | |language |(EN) | |collate |en_US.UTF-8 | |tz |Zulu | |date |2017-03-31 |
Packages
|package |* |version |date |source | |:--------------|:--|:----------|:----------|:--------------------------------| |dplyr | |0.5.0 |2016-06-24 |CRAN (R 3.3.2) | |knitr | |1.15.1 |2016-11-22 |cran (@1.15.1) | |lazyeval | |0.2.0 |2016-06-12 |cran (@0.2.0) | |microbenchmark | |1.4-2.1 |2015-11-25 |cran (@1.4-2.1) | |nycflights13 | |0.2.2 |2017-01-27 |cran (@0.2.2) | |Rcpp | |0.12.10 |2017-03-31 |Github (RcppCore/Rcpp@886f5df) | |rmarkdown | |1.4 |2017-03-24 |cran (@1.4) | |testthat | |1.0.2.9000 |2017-02-27 |Github (hadley/testthat@b72a228) | |tibble | |1.2 |2016-08-26 |cran (@1.2) | |withr | |1.0.2 |2016-06-20 |CRAN (R 3.3.1) |
Check results
10 packages with problems
|package |version | errors| warnings| notes| |:-------------|:-------|------:|--------:|-----:| |dat |0.1.0 | 1| 0| 0| |flextable |0.1.0 | 0| 1| 0| |FSelectorRcpp |0.1.2 | 1| 0| 2| |ggimage |0.0.4 | 1| 0| 0| |haven |1.0.0 | 2| 0| 1| |hddtools |0.6 | 1| 0| 0| |heemod |0.8.0 | 1| 1| 1| |highcharter |0.5.0 | 0| 1| 1| |officer |0.1.1 | 2| 1| 0| |plotly |4.5.6 | 1| 0| 0|
dat (0.1.0)
Maintainer: Sebastian Warnholz wahani@gmail.com Bug reports: https://github.com/wahani/dat/issues
1 error | 0 warnings | 0 notes
checking tests ... ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
^
tests/testthat/test-trunc-mat.R:5:3: style: Variable and function names should not be longer than 25 characters.
print_arg_names_without_ellipsis <- setdiff(print_arg_names, "...")
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tests/testthat/test-trunc-mat.R:9:16: style: Variable and function names should not be longer than 25 characters.
expect_equal(print_arg_names_without_ellipsis, trunc_mat_arg_names)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
testthat results ================================================================
OK: 107 SKIPPED: 0 FAILED: 1
1. Failure: Package Style (@test-lintr.R#5)
Error: testthat unit tests failed
Execution halted
flextable (0.1.0)
Maintainer: David Gohel david.gohel@ardata.fr
0 errors | 1 warning | 0 notes
checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: officer
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
Quitting from lines 39-41 (format.Rmd)
Error: processing vignette 'format.Rmd' failed with diagnostics:
cannot open the connection
Execution halted
FSelectorRcpp (0.1.2)
Maintainer: Zygmunt Zawadzki zygmunt@zstat.pl Bug reports: https://github.com/mi2-warsaw/FSelectorRcpp/issues
1 error | 0 warnings | 2 notes
checking examples ... ERROR
Running examples in ‘FSelectorRcpp-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: feature_search
> ### Title: General Feature Searching Engine
> ### Aliases: feature_search
>
> ### ** Examples
>
>
> # Enable parallelization in examples
> library(doSNOW) # doSNOW has an option for progress bar
Loading required package: foreach
Loading required package: iterators
Loading required package: snow
> cl <- makeCluster(2)
Loading required namespace: Rmpi
Error in Rmpi::mpi.comm.spawn(slave = mpitask, slavearg = args, nslaves = count, :
MPI_Comm_spawn is not supported.
Calls: makeCluster -> makeMPIcluster -> <Anonymous>
Execution halted
checking package dependencies ... NOTE
Package suggested but not available for checking: ‘RTCGA.rnaseq’
checking installed package size ... NOTE
installed size is 9.7Mb
sub-directories of 1Mb or more:
doc 2.2Mb
libs 7.3Mb
ggimage (0.0.4)
Maintainer: Guangchuang Yu guangchuangyu@gmail.com Bug reports: https://github.com/GuangchuangYu/ggimage/issues
1 error | 0 warnings | 0 notes
checking package dependencies ... ERROR
Packages required but not available: ‘EBImage’ ‘gridGraphics’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
haven (1.0.0)
Maintainer: Hadley Wickham hadley@rstudio.com Bug reports: https://github.com/hadley/haven/issues
2 errors | 0 warnings | 1 note
checking examples ... ERROR
Running examples in ‘haven-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: read_dta
> ### Title: Read and write Stata DTA files.
> ### Aliases: read_dta read_stata write_dta
>
> ### ** Examples
... 14 lines ...
8 5.0 3.4 1.5 0.2 setosa
9 4.4 2.9 1.4 0.2 setosa
10 4.9 3.1 1.5 0.1 setosa
# ... with 140 more rows
>
> tmp <- tempfile(fileext = ".dta")
> write_dta(mtcars, tmp)
Error in write_dta_(data, normalizePath(path, mustWork = FALSE), version = stata_file_format(version)) :
Writing failure: Unable to write data.
Calls: write_dta -> write_dta_ -> .Call
Execution halted
checking tests ... ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
testthat results ================================================================
OK: 132 SKIPPED: 0 FAILED: 9
1. Error: can roundtrip basic types (@test-write-dta.R#5)
2. Error: can roundtrip missing values (as much as possible) (@test-write-dta.R#12)
3. Error: can roundtrip date times (@test-write-dta.R#23)
4. Error: infinity gets converted to NA (@test-write-dta.R#28)
5. Error: factors become labelleds (@test-write-dta.R#33)
6. Error: labels are preserved (@test-write-dta.R#44)
7. Error: labelleds are round tripped (@test-write-dta.R#52)
8. Error: factors become labelleds (@test-write-dta.R#59)
9. Error: labels are converted to utf-8 (@test-write-dta.R#73)
Error: testthat unit tests failed
Execution halted
checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
hddtools (0.6)
Maintainer: Claudia Vitolo cvitolodev@gmail.com Bug reports: https://github.com/ropensci/hddtools/issues
1 error | 0 warnings | 0 notes
checking tests ... ERROR
Running ‘testthat.R’ [14s/22s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
3: stop(gettextf("unable to find an inherited method for function %s for signature %s",
sQuote(fdef@generic), sQuote(cnames)), domain = NA)
trying URL 'ftp://ftp.bafg.de/pub/REFERATE/GRDC/ltdata/africa.zip'
ftp data connection made, file length 2730333 bytes
==================================================
downloaded 2.6 MB
testthat results ================================================================
OK: 55 SKIPPED: 1 FAILED: 2
1. Error: Test TRMM function using dates in the past (@test-TRMM.R#15)
2. Error: Test TRMM function using 3-hourly dates in the past (@test-TRMM.R#58)
Error: testthat unit tests failed
Execution halted
heemod (0.8.0)
Maintainer: Antoine Filipovic-Pierucci pierucci@gmail.com Bug reports: https://github.com/pierucci/heemod/issues
1 error | 1 warning | 1 note
checking tests ... ERROR
Running ‘testthat.R’ [33s/36s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
5: as.data.frame(flexsurv::summary.flexsurvreg(x, t = times_surv, type = "cumhaz"))
6: flexsurv::summary.flexsurvreg
7: getExportedValue(pkg, name)
8: stop(gettextf("'%s' is not an exported object from 'namespace:%s'", name, getNamespaceName(ns)),
call. = FALSE, domain = NA)
.model from to prob
1 standard RevisionTHR SuccessfulRevision <NA>
2 new RevisionTHR SuccessfulRevision <NA>
testthat results ================================================================
OK: 346 SKIPPED: 0 FAILED: 1
1. Error: (unknown) (@test_survival.R#23)
Error: testthat unit tests failed
Execution halted
checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
...
'colour', which will replace the existing scale.
Scale for 'colour' is already present. Adding another scale for
'colour', which will replace the existing scale.
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
... 8 lines ...
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Error in mutate_impl(.data, dots) :
'summary.flexsurvreg' is not an exported object from 'namespace:flexsurv'
Quitting from lines 42-83 (j-survival.Rmd)
Error: processing vignette 'j-survival.Rmd' failed with diagnostics:
Error in parameter: p2.
Execution halted
checking dependencies in R code ... NOTE
Missing or unexported object: ‘flexsurv::summary.flexsurvreg’
highcharter (0.5.0)
Maintainer: Joshua Kunst jbkunst@gmail.com Bug reports: https://github.com/jbkunst/highcharter/issues
0 errors | 1 warning | 1 note
checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Highcharts (www.highcharts.com) is a Highsoft software product which is
not free for commercial and Governmental use
Quitting from lines 45-46 (charting-data-frames.Rmd)
Error: processing vignette 'charting-data-frames.Rmd' failed with diagnostics:
cannot open the connection
Execution halted
checking installed package size ... NOTE
installed size is 16.5Mb
sub-directories of 1Mb or more:
doc 13.7Mb
htmlwidgets 1.9Mb
officer (0.1.1)
Maintainer: David Gohel david.gohel@ardata.fr Bug reports: https://github.com/davidgohel/officer/issues
2 errors | 1 warning | 0 notes
checking examples ... ERROR
Running examples in ‘officer-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: slip_in_img
> ### Title: append an image
> ### Aliases: slip_in_img
>
> ### ** Examples
>
> library(magrittr)
> img.file <- file.path( Sys.getenv("R_HOME"), "doc", "html", "logo.jpg" )
> x <- read_docx() %>%
+ body_add_par("R logo: ", style = "Normal") %>%
+ slip_in_img(src = img.file, style = "strong", width = .3, height = .3)
Error: file.exists(src) is not TRUE
Execution halted
checking tests ... ERROR
Running ‘testthat.R’ [21s/21s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
9: ph_with_img(., type = "body", src = img.file, height = 1.06, width = 1.39)
10: external_img(src, width = width, height = height)
11: stopifnot(file.exists(src))
12: stop(sprintf(ngettext(length(r), "%s is not TRUE", "%s are not all TRUE"), ch), call. = FALSE,
domain = NA)
testthat results ================================================================
OK: 317 SKIPPED: 0 FAILED: 4
1. Error: image add (@test-docx-add.R#68)
2. Error: pml fp_border (@test-fp_cell.R#75)
3. Error: css fp_border (@test-fp_cell.R#165)
4. Error: add img into placeholder (@test-pptx-add.R#67)
Error: testthat unit tests failed
Execution halted
checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 181-191 (powerpoint.Rmd)
Error: processing vignette 'powerpoint.Rmd' failed with diagnostics:
file.exists(src) is not TRUE
Execution halted
plotly (4.5.6)
Maintainer: Carson Sievert cpsievert1@gmail.com Bug reports: https://github.com/ropensci/plotly/issues
1 error | 0 warnings | 0 notes
checking tests ... ERROR
Running ‘testthat.R’ [44s/44s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
[1] "Running test: plotly-group-within-trace"
[1] "Running test: plotly-alpha-blending"
[1] "Running test: plotly-alpha-no-color"
[1] "Running test: plotly-factor-axis"
[1] "Running test: plotly-character-axis"
[1] "Running test: plotly-histogram"
[1] "Running test: plotly-histogram-vert"
[1] "Running test: plotly-inherit-FALSE"
[1] "Running test: plotly-time-series-summary"
testthat results ================================================================
OK: 813 SKIPPED: 17 FAILED: 1
1. Error: datetimes are converted to e.g. 2013-01-02 05:00:00 (@test-ggplot-date.R#11)
Error: testthat unit tests failed
Execution halted
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