surv_km: Group-Specific Kaplan-Meier Survival Curves

In RobinDenz1/adjustedCurves: Confounder-Adjusted Survival Curves and Cumulative Incidence Functions

Group-Specific Kaplan-Meier Survival Curves

Description

This page explains the details of estimating group-specific Kaplan-Meier curves for single event time-to-event data (method="km" in the adjustedsurv function). All regular arguments of the adjustedsurv function can be used. Further arguments specific to this method are listed below.

Calculates standard Kaplan-Meier survival curves, stratified by the group variable. NO adjustment for any confounders is made. This function is included only for reference and should not be used when confounder adjusted survival curves are desired.

Arguments

conf_type

The type of confidence interval that should be calculated. Has to be a character string, passed to the conf.type argument in the survfit function. Defaults to "log", which is also the default in survfit.

Details

• Type of Adjustment: NO adjustments are made. This is just a stratified Kaplan-Meier estimator.

• Doubly-Robust: Estimates are not Doubly-Robust.

• Categorical groups: Any number of levels in variable are allowed. Must be a factor variable.

• Approximate Variance: Calculations to approximate the variance and confidence intervals are available.

• Allowed Time Values: Allows both continuous and integer time.

• Bounded Estimates: Estimates are guaranteed to be bounded in the 0 to 1 probability range.

• Monotone Function: Estimates are guaranteed to be monotone.

• Dependencies: This method relies on the the survival package.

Value

Adds the following additional objects to the output of the adjustedsurv function:

• survfit_object: The survfit object used to calculate the Kaplan-Meier curves.

Author(s)

The wrapper function was written by Robin Denz, the survfit function (which this wrapper is build around) was written by other people. See ?survfit for more details.

References

E. L. Kaplan and Paul Meier (1958). "Nonparametric Estimation from Incomplete Observations". In: Journal of the American Statistical Association 53.282, pp. 457-481

See Also

survfit

Examples

library(adjustedCurves)
library(survival)

set.seed(42)

# simulate some data as example
sim_dat <- sim_confounded_surv(n=50, max_t=1.2)
sim_dat$group <- as.factor(sim_dat$group)

# calculate un-adjusted kaplan-meier survival curves
adjsurv <- adjustedsurv(data=sim_dat,
                        variable="group",
                        ev_time="time",
                        event="event",
                        method="km")

# plot the curves
plot(adjsurv)

RobinDenz1/adjustedCurves documentation built on Sept. 27, 2024, 7:04 p.m.