optimal.prob: Returns an estimate of the fundamental biodiversity number

In RobinHankin/untb: Ecological Drift under the UNTB

Returns an estimate of the fundamental biodiversity number

Description

Returns a maximum likelihood estimate for the fundamental biodiversity number \theta (function optimal.theta()) or the probability of mutation (function optimal.prob()) and optionally return information about the likely error

Usage

optimal.prob(x,  interval=NULL, N=NULL, like=NULL, ...)
optimal.theta(x, interval=NULL, N=NULL, like=NULL, ...)

Arguments

x	Ecosystem vector or species count table
interval	Bracketing interval for probability of mutation to be passed to the optimization routine (here optimize()). Default of NULL means to use a wide interval. Note that this argument is interpreted as an interval of \theta for both optimal.prob() and optimal.theta().
N	Integer; the number of parametric resampled estimates to give. Default of NULL means to return just the maximum likelihood estimate
like	Units of likelihood to calculate credible interval. Edwards recommends using 2
...	Further arguments passed to optimize()

Note

The fundamental biodiversity parameter \theta is 2\nu J, where \nu is the probability of mutation (ie, as estimated by optimal.prob()), and J is the size of the ecosystem.

For the general case of dispersal limitation, see functions etienne() and optimal.params().

Author(s)

Robin K. S. Hankin

See Also

etienne,optimal.params.sloss,optimal.params.gst

Examples

data(butterflies)
optimal.prob(butterflies)
optimal.theta(butterflies)

RobinHankin/untb documentation built on Dec. 7, 2024, 6:30 p.m.