| coverage_clustering | Cluster coverage data |
| coverage_heatmap | Coverage heatmap |
| generate_color_palette | Generate color palette |
| load_contig_lengths | Load a contig lengths file |
| load_contig_names | Load a contig names file |
| load_coverage_table | Load a coverage table |
| load_mapping_results | Load a mapping results file |
| load_popmap | Load a population map |
| load_sex_distribution_table | Load a sex distribution table |
| mapping_circular_plot | Mapping circular plot |
| mapping_manhattan_plot | Mapping manhattan plot |
| plot_contig | Mapping contig |
| plot_coverage | Plot coverage |
| plot_genome_circular | Mapping circular plot |
| plot_genome_manhattan | Mapping manhattan plot |
| plot_sex_distribution | Plot sex distribution |
| sex_distribution_heatmap | Sex distribution heatmap |
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