cellProximityEnrichmentEachSpot: cellProximityEnrichmentEachSpot
In RubD/Giotto_site: Spatial Single-Cell Transcriptomics Toolbox
cellProximityEnrichmentEachSpot R Documentation
cellProximityEnrichmentEachSpot
Description
Compute cell-cell interaction enrichment for each spot with its
interacted spots (observed)
Usage
cellProximityEnrichmentEachSpot(
gobject,
spatial_network_name = "spatial_network",
cluster_column = "cell_ID"
)
Arguments
gobject
giotto object
spatial_network_name
name of spatial network to use
cluster_column
name of column to use for clusters
feat_type
feature type
Value
matrix that rownames are cell-cell interaction pairs and colnames are cell_IDs
RubD/Giotto_site documentation built on April 12, 2025, 6:46 p.m.
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| cellProximityEnrichmentEachSpot | R Documentation |
cellProximityEnrichmentEachSpot
Description
Compute cell-cell interaction enrichment for each spot with its interacted spots (observed)
Usage
cellProximityEnrichmentEachSpot(
gobject,
spatial_network_name = "spatial_network",
cluster_column = "cell_ID"
)
Arguments
gobject |
giotto object |
spatial_network_name |
name of spatial network to use |
cluster_column |
name of column to use for clusters |
feat_type |
feature type |
Value
matrix that rownames are cell-cell interaction pairs and colnames are cell_IDs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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