plot.labelling: Plot method for 'labelling' objects

In RuggeroFerrazza/Lab_Project: A package for the analysis of MS isotopic patterns in labelling experiments

Description

Produces different types of summary plots for a labelling object.

Usage

## S3 method for class 'labelling'
plot(x, type = "patterns", saveplots = F, ...)

Arguments

x	Object of class labelling
type	The type of output produced. Available options are "patterns", "residuals", "summary"
saveplots	Should the plots be saved as a PDF file?
...	Other parameters

Details

The default (type 'patterns') plot shows, for each sample in the class labelling object, the normalized experimental pattern superimposed to its fitted theoretical pattern. By setting type to 'residuals', the function plots the residuals (the differences between experimental and best fitted theoretical patterns). Type 'summary' produces a summary plot showing the estimated percentage abundances with related standard errors. If saveplot is TRUE, the plots are saved to a PDF file in the working directory.

Value

One or more plots

Author(s)

Ruggero Ferrazza

Examples

## Not run: 
plot(x=fitted_abundances, type="patterns", saveplots=TRUE) 
plot(x=fitted_abundances, type="residuals", saveplots=TRUE) 
plot(x=fitted_abundances, type="summary", saveplots=TRUE)

## End(Not run)

RuggeroFerrazza/Lab_Project documentation built on May 9, 2019, 10:36 a.m.