Files in RyDe4/ChIPanalyzer

ChIPAnalyzer

ChIPAnalyzer.Rproj

DESCRIPTION

LICENSE

NAMESPACE

R/Data.R R/MethylSearch.R R/QuadCalc.R R/Visualization.R R/runChIPAnalyzer.R README.Rmd README.md

inst/CITATION

inst/extdata/FOXA2 Quad Plot.png

inst/extdata/FOXA2_quad_workflow_example.png

inst/extdata/HcfUMethylData.bed

inst/extdata/MAZ_G4_plot_all_quads.png

inst/extdata/MAZ_high_score.bed

inst/extdata/MAZ_high_scores_plot.png

inst/extdata/MAZ_quad_workflow_example.png.png

inst/extdata/MAZ_very_small_test.bed

inst/extdata/methyl_percent_plot.png

inst/shiny-scripts/app.R

man/figures/README-pressure-1.png

man/findQuads.Rd man/getMethylOverlap.Rd man/getQuadCoveragePercentage.Rd man/getQuadMatrix.Rd man/plotMethylPercentage.Rd man/plotQuadPosition.Rd man/runChIPAnalyzer.Rd tests/testthat.R

tests/testthat/HcfUMethylData.bed

tests/testthat/MAZ_very_small_test.bed

tests/testthat/test-findQuads.R tests/testthat/test-getMethylOverlap.R tests/testthat/test-getQuadCoveragePercentage.R tests/testthat/test-getQuadMatrix.R tests/testthat/test-methylIntegration1.R tests/testthat/test-plotMethylPercentage.R tests/testthat/test-plotQuadPosition.R tests/testthat/test-quadIntegration.R vignettes/Analyze_G-quadruplexes.Rmd vignettes/Analyze_Peak_Methylation.Rmd

vignettes/MAZ_high_scores_plot.png

vignettes/Overview.Rmd

vignettes/Shiny_demo.PNG

vignettes/methyl_plot.png

RyDe4/ChIPanalyzer documentation built on Sept. 1, 2023, 9:18 a.m.